Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020822.1 Corchorus olitorius cultivar O-4 contig20855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60597

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4364--4401
15
2.4
17
86
8
53
28
5
10
55
1.56
13329--13367
2
19.0
2
89
5
60
48
2
2
46
1.29
13382--13472
43
2.1
43
97
2
175
31
15
18
34
1.92
13474--14135
321
2.1
322
82
6
815
36
17
13
32
1.88
14356--16300
663
2.9
645
83
6
2393
37
15
13
33
1.87
14363--16300
332
5.8
329
75
9
1772
37
15
13
33
1.87
19184--19590
40
10.2
40
91
2
599
33
26
5
34
1.80
19184--19590
79
5.1
78
92
3
625
33
26
5
34
1.80
19184--19590
119
3.4
117
88
6
577
33
26
5
34
1.80
22719--22790
2
36.5
2
87
2
74
48
4
4
43
1.41
22737--22790
16
3.4
16
92
2
83
53
5
0
40
1.24
23867--23904
14
2.9
14
84
11
53
50
13
0
36
1.42
36484--36531
6
8.0
6
97
0
78
45
33
20
0
1.52
44330--44363
2
17.0
2
100
0
68
50
0
0
50
1.00
46028--46121
47
2.0
46
93
2
161
34
11
12
41
1.80
46524--46560
15
2.4
16
86
9
58
62
0
0
37
0.96
48399--48480
16
4.8
16
75
16
74
60
1
4
32
1.25
48397--48512
54
2.2
54
81
10
141
56
1
6
35
1.34
51904--51949
3
15.3
3
95
0
56
23
43
32
0
1.54
60100--60153
22
2.5
22
84
6
74
55
0
7
37
1.28
60360--60405
2
23.5
2
95
4
85
50
0
0
50
1.00

Tables:   1

The End!