Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020823.1 Corchorus olitorius cultivar O-4 contig20856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103914

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--43
2
21.0
2
95
0
75
50
0
2
47
1.14
21545--21815
126
2.2
125
93
2
470
19
24
21
33
1.97
24835--24902
3
23.0
3
85
8
86
61
0
1
36
1.05
38055--38089
2
17.5
2
100
0
70
48
0
0
51
1.00
39053--39108
29
2.0
28
89
3
85
30
10
19
39
1.86
48748--48983
118
2.0
117
94
0
418
28
9
23
38
1.86
52523--52576
27
2.0
27
96
0
99
31
22
20
25
1.98
54194--54306
56
2.0
56
94
0
199
46
9
11
31
1.72
56487--57191
22
32.2
22
69
15
311
38
16
9
36
1.80
56590--56684
43
2.2
44
88
1
138
36
17
12
32
1.88
56677--56825
47
3.4
44
80
5
142
41
14
7
36
1.73
56700--57102
198
2.1
191
89
3
608
39
14
8
36
1.78
56700--57144
191
2.3
194
86
5
603
39
14
8
37
1.77
57633--57707
37
2.0
37
100
0
150
45
10
10
33
1.73
57586--57763
93
1.9
93
96
0
329
43
9
11
34
1.74
60643--60667
12
2.1
12
100
0
50
56
20
0
24
1.43
65488--65536
22
2.2
22
96
0
89
34
16
14
34
1.89
69724--69748
1
25.0
1
100
0
50
100
0
0
0
0.00
71967--72032
32
2.1
32
100
0
132
28
21
22
27
1.99
75260--75298
20
2.0
20
85
10
53
69
7
2
20
1.26
77299--77327
2
14.5
2
100
0
58
51
0
0
48
1.00
78018--78827
308
2.7
308
84
8
1000
37
13
12
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78936--78978
19
2.3
19
84
8
52
41
4
0
53
1.21
83924--83949
3
8.7
3
100
0
52
30
0
0
69
0.89
86706--86894
47
4.0
47
96
2
337
31
10
15
42
1.81
90930--90967
19
2.2
17
86
13
51
47
18
10
23
1.79
91373--91402
2
15.5
2
93
6
53
50
0
0
50
1.00
92094--92123
2
15.0
2
100
0
60
50
0
0
50
1.00
92412--92437
1
26.0
1
100
0
52
100
0
0
0
0.00
95899--96060
60
2.7
60
85
3
211
37
17
17
27
1.92
95894--96000
31
3.5
31
68
14
87
37
17
16
28
1.92
96101--96262
60
2.7
60
81
5
184
29
17
14
38
1.90
97776--97827
21
2.4
21
87
3
77
73
13
11
1
1.19
102434--102481
12
3.9
12
78
5
60
41
2
4
52
1.32
102805--102844
2
20.5
2
94
5
73
52
0
0
47
1.00

Tables:   1

The End!