Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020825.1 Corchorus olitorius cultivar O-4 contig20858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2596
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Found at i:791 original size:324 final size:323
Alignment explanation
Indices: 1--2596 Score: 3491
Period size: 320 Copynumber: 8.1 Consensus size: 323
* * *
1 CCAAAAACCGTGATAG--GTACACGATTTCGGATAAAATCTGACTCGGAAAGTTTTTCCACAATT
1 CCAAAAACCGTGATAGTAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAATT
* *
64 TTTTTCGATAATACTCAGAAAAAATATATAAATCAACGCCAAAAAAATTGAA-GGTTTTTCACGC
66 TTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGC
* * * *
128 TTCTAGTATCGTTTTTGCATTTTTTTCCCCGAATTTGTTTCTATTTAACTGTAAACAAGATTTAG
131 TTCTAATATCGTTTTTCCATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAG
* ** *
193 ATACTCGTAAA-GTAAATTCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATT
196 ATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATATT
* *
257 TCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGGACGCCGAAATGCGTTTTTAG
261 TCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTAG
* * *
320 CCAAAAACC---------GTACACGATTTCGGCCAAAATCTGATTCGAAAAGTTTTTTCTCAATT
1 CCAAAAACCGTGATAGTAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAATT
* * *
376 TTTTTCCATAATACTCAGAGAAAATATATAATTCAACGCCAAAATAATTGAAGTGTTTTTCACGC
66 TTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGC
* *
441 TTCTAATATCGTTTTTCCGA-TTTTTTTACCGAATTTATTTTTATTTAACTGTAAACAAGATTTA
131 TTCTAATATCGTTTTTCC-ATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTA
505 GATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATAT
195 GATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATAT
* *
570 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCGCCGAAATGCATTTTTAG
260 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTAG
* *
634 CCAAAAACCGTGATAGTTAGTACACGATTTCGGCTAAAATCTGACTCGGAAATTTTTTTCACAAT
1 CCAAAAACCGTGATAG-TAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAAT
*
699 TTTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGATTTTCACG
65 TTTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACG
* * * * *
764 CTTCTAATATCGTTTTTGCATTTTTTTTTGCCGAATTTATTTCTATTTAACTTTAAAAAAGATTC
130 CTTCTAATATCGTTTTTCCA-TTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTT
* *
829 AGATTCTCGTAAA-AGCAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAGAT
194 AGATTCTCGTAAACA-CAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGAT
* * * * *
893 ATTTCAAGGAGTTTTTCTGCCAAAAATCATGCAAAACTGAGCCAGGGTGCTGAAATGCGTTTTTT
258 ATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTA
958 G
323 G
* * * * *
959 CCAAAAAAC-TG-T-GATAGTACACGATTTCGGCCAAAATCTGAATCGAAAAATTTTTTCTCAAT
1 CCAAAAACCGTGATAG-TAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAAT
* * *
1021 TTTTTTCCATAATACTCAGAAAAAATATTTAATTCAAGGCCAAAATAATTGAAGGGTTTTAT-AC
65 TTTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTT-TCAC
* * * * * * * *
1085 GCTTTTAATATTGTTTTTCCAATTTTTTTACTGAATTTATTTTTATTTAACAGTAAACATGATTT
129 GCTTCTAATATCGTTTTTCCATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTT
** *
1150 AGATGGTCGTAAACACAAA-TCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATA
194 AGATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATA
* ** *
1214 TTTCAAGGAGTCTATT-TGCCAAAAATCATGCAAAACTGAGTC--GAAGCCGAAATGCATTTTTA
259 TTTCAAGGAGTCT-TTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTA
1276 G
323 G
* * * *
1277 CCAAAAACCGTGATAGTTAGTAAACGATTTCGGCTAAAATATGACTCGGAAAATTTTTTCACAAT
1 CCAAAAACCGTGATAG-TAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAAT
* * *
1342 TTCTTTCGATAATACTCAGAAAAAATATATAAATCAACGCCAAAAAAAATTGAA-GGTTTTTCAC
65 TTTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCC-AAAAAAATTGAAGGGTTTTTCAC
* * * * * *
1406 GTTTCTAGTATCGTTTTTGC-TTTCTTTCCCCGAATTTGTTTCTATTTAACTGTAAACAAGATTT
129 GCTTCTAATATCGTTTTTCCATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTT
* * *
1470 AGATGCTCGTAAACACAAATTTTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATA
194 AGATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATA
* *
1535 TTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCTGAGGCGCCGAAATGCGTTTTTAG
259 TTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTAG
*
1600 CCAAAAACC---------GTACACGATTTCGGCTAAAATCTGATTC-GAAAGTTTTTTCTCAATT
1 CCAAAAACCGTGATAGTAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAATT
* * * * *
1655 TCTTTCCATAATACTCAGAGAAAATATATAATTCAAGGCCAAAATAATTGAAGGGTTTTTTACGC
66 TTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGC
* *
1720 TTCTAATATCGTTTTTCCAATTTTTTTTACCGAATTTATTTTTATTTAACTGTAAACAAGATTTA
131 TTCTAATATCGTTTTTCC-ATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTA
* * *
1785 GATGCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGAATTGGTTCGATGAATATAGATAT
195 GATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATAT
* *
1850 TTCAAGGAGTCTTTCTGTCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGATTTTAG
260 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTAG
* * * * * *
1914 CCAAAATCCATGATAG-A-TACACGATTTCAGCCAAAATCTGATTCGAAAAGTTTTTTCTCAATT
1 CCAAAAACCGTGATAGTAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAATT
* *
1977 GTTTTTCCATAATACTCAGAAAAAATATATAAATCAACGCCAATAAAATTGAAGGGTTTTTCACG
66 -TTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACG
* *
2042 CTTCTAATATCGTTTTTACA--TTTTTTCCCGAATTTATTTCTATTTAACTCTAAACAAGATTTA
130 CTTCTAATATCGTTTTTCCATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTA
* * * *
2105 GATTCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTATATGAATATAGATAT
195 GATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATAT
* *
2170 TTCAAGGAGTCTTTCTGCCAAAAATCATTCAAAACTGAGCCGGGGCGCCAAAATGCGTTTTT-G
260 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTAG
* * *
2233 CCCAAAAACTGTGATAGTTAGTATACGATTTCGGCCAAAATCTGAAC-CGGCAAA-TTTTTTCTC
1 -CCAAAAACCGTGATAG-TAGTACACGATTTCGGCTAAAATCTG-ACTCGG-AAAGTTTTTTCTC
* * * *
2296 ATTTTTTTTCCACAATACTC-GAAAAAATATATAATTCAACACC-AAAAAATTGAAGGGTTTTCC
62 AATTTTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTC
* **
2359 ACGCTTCTAATATCGTTTTTCCATATTTTTTTTCCCGATTTTATTTCTATTTAACTCCAAACAAG
127 ACGCTTCTAATATCGTTTTTCC--ATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAG
* * * * * * * *
2424 ATTCAGATTCTCGTAAAAAGAAATCCTTAAATCTATTGTGGCTGAGATTTGCTTCA-AGGAATAT
190 ATTTAGATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTT-AGATGAATAT
* * * *
2488 ATATATTTCAAGGAGTCTATCTGCCAAAAATCATGCAAAACTGAGTCGGGGCGCCGAAATGCCTT
254 AGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTT
2553 TTTAG
319 TTTAG
* * *
2558 CCAAAAACCGTAATAATTAATACACGATTTCGGCTAAAA
1 CCAAAAACCGTGAT-AGTAGTACACGATTTCGGCTAAAA
Statistics
Matches: 2020, Mismatches: 203, Indels: 103
0.87 0.09 0.04
Matches are distributed among these distances:
311 11 0.01
312 167 0.08
313 103 0.05
314 290 0.14
318 24 0.01
319 12 0.01
320 344 0.17
321 281 0.14
322 167 0.08
323 140 0.07
324 313 0.15
325 168 0.08
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (323 bp):
CCAAAAACCGTGATAGTAGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCTCAATT
TTTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTCACGC
TTCTAATATCGTTTTTCCATTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAG
ATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATATT
TCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGTTTTTAG
Found at i:1874 original size:955 final size:951
Alignment explanation
Indices: 1--2569 Score: 3546
Period size: 955 Copynumber: 2.7 Consensus size: 951
** * * * *
1 CCAAAAACCGTGATAGGTACACGATTTCGGATAAAATCTGACTCGGAAAGTTTTTCCACAATTTT
1 CCAAAAACCGTGATA-GTACACGATTTCGGCCAAAATCTGAATCGAAAAGTTTTTTCTCAATTTT
*
66 TTTCGATAATACTCAGAAAAAATATATAAATCAACGCCAAAAAAATTGAA-GGTTTTTCACGCTT
65 TTTCCATAATACTCAGAAAAAATATATAAATCAACGCC-AAAAAATTGAAGGGTTTTTCACGCTT
* * *
130 CTAGTATCGTTTTTGCATTTTTTTCCCCGAATTTGTTTCTATTTAACTGTAAACAAGATTTAGAT
129 CTAATATCGTTTTTACATTTTTTT-CCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAGAT
* *
195 ACTCGTAAAGTA-AATTCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTC
193 ACTCGTAAA-AACAAATCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTC
*
259 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCTGGGACGCCGAAATGCGTTTTTAGCCAA
257 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAG-T-CGACGCCGAAATGCGTTTTTAGCCAA
* *
324 AAACC----------GTACACGATTTCGGCCAAAATCTGATTC-GAAAAGTTTTTTCTCAATTTT
320 AAACCGTGATAGTTAGTAAACGATTTCGGCCAAAATCTGACTCGGAAAA-TTTTTTCTCAATTTT
* *
378 TTTCCATAATACTCAGAGAAAATATATAATTCAACGCCAAAATAATTGAAGTGTTTTTCACGCTT
384 TTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAG-GTTTTTCACGCTT
* * *
443 CTAATATCGTTTTTCCGATTTTTTTACCGAATTTATTTTTATTTAACTGTAAACAAGATTTAGAT
448 CTAATATCGTTTTT--GCTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAGAT
*
508 TCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTAGATGAATATAGATATTTC
511 TCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTC
573 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCGCCGAAATGCATTTTTAGCCAA
576 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCGCCGAAATGCATTTTTAGCCAA
* *
638 AAACCGTGATAGTTAGTACACGATTTCGGCTAAAATCTGACTCGGAAATTTTTTTCACAATTTTT
641 AAACC----------GTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCACAATTTCT
703 TTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGATTTTCACGCTTC
696 TTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGATTTTCACGCTTC
* * * *
768 TAATATCGTTTTTGCATTTTTTTTTGCCGAATTTATTTCTATTTAACTTTAAAAAAGATTCAGAT
761 TAATATCGTTTTTCCAATTTTTTTTACCGAATTTATTTCTATTTAACTGTAAAAAAGATTCAGAT
* * *
833 TCTCGTAAAAGCAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTC
826 GCTCGTAAAAGCAAATCCTTAAATCCATTGTGGATGAGAATTGGTTAGATGAATATAGATATTTC
* * * * *
898 AAGGAGTTTTTCTGCCAAAAATCATGCAAAACTGAGCCAGGGTGCTGAAATGCGTTTTTTG
891 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCAGGGCGCCGAAATGCGATTTTAG
* *
959 CCAAAAAACTGTGATAGTACACGATTTCGGCCAAAATCTGAATCGAAAAATTTTTTCTCAATTTT
1 CC-AAAAACCGTGATAGTACACGATTTCGGCCAAAATCTGAATCGAAAAGTTTTTTCTCAATTTT
* * *
1024 TTTCCATAATACTCAGAAAAAATATTTAATTCAAGGCCAAAATAATTGAAGGGTTTTAT-ACGCT
65 TTTCCATAATACTCAGAAAAAATATATAAATCAACGCCAAAA-AATTGAAGGGTTTT-TCACGCT
* * * * * * * *
1088 TTTAATATTGTTTTTCCAATTTTTTTACTGAATTTATTTTTATTTAACAGTAAACATGATTTAGA
128 TCTAATATCGTTTTTAC-ATTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAGA
** *
1153 TGGTCGTAAACACAAATCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTC
192 TACTCGTAAAAACAAATCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTC
* *
1218 AAGGAGTCTATT-TGCCAAAAATCATGCAAAACTGAGTCGAAGCCGAAATGCATTTTTAGCCAAA
257 AAGGAGTCT-TTCTGCCAAAAATCATGCAAAACTGAGTCGACGCCGAAATGCGTTTTTAGCCAAA
* * * *
1282 AACCGTGATAGTTAGTAAACGATTTCGGCTAAAATATGACTCGGAAAATTTTTTCACAATTTCTT
321 AACCGTGATAGTTAGTAAACGATTTCGGCCAAAATCTGACTCGGAAAATTTTTTCTCAATTTTTT
* * *
1347 TCGATAATACTCAGAAAAAATATATAAATCAACGCCAAAAAAAATTGAAGGTTTTTCACGTTTCT
386 TCCATAATACTCAGAAAAAATATATAATTCAACGCC-AAAAAAATTGAAGGTTTTTCACGCTTCT
* * * *
1412 AGTATCGTTTTTGCTTTCTTTCCCCGAATTTGTTTCTATTTAACTGTAAACAAGATTTAGATGCT
450 AATATCGTTTTTGCTTT-TTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAGATTCT
*
1477 CGTAAACACAAATTTTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTCAAG
514 CGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTCAAG
* *
1542 GAGTCTTTCTGCCAAAAATCATGCAAAACTGAG-CTGAGGCGCCGAAATGCGTTTTTAGCCAAAA
579 GAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTC-GGGGCGCCGAAATGCATTTTTAGCCAAAA
* *
1606 ACCGTACACGATTTCGGCTAAAATCTGATTC-GAAAGTTTTTTCTCAATTTCTTTCCATAATACT
643 ACCGTACACGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCACAATTTCTTTCCATAATACT
* * * * *
1670 CAGAGAAAATATATAATTCAAGGCCAAAATAATTGAAGGGTTTTTTACGCTTCTAATATCGTTTT
708 CAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGATTTTCACGCTTCTAATATCGTTTT
* * *
1735 TCCAATTTTTTTTACCGAATTTATTTTTATTTAACTGTAAACAAGATTTAGATGCTCGTAAACA-
773 TCCAATTTTTTTTACCGAATTTATTTCTATTTAACTGTAAAAAAGATTCAGATGCTCGTAAA-AG
* *
1799 CAAATTCTTAAATCCATTGTGGATGAGAATTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
837 CAAATCCTTAAATCCATTGTGGATGAGAATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT
* *
1864 CTGTCAAAAATCATGCAAAACTGAGCCGGGGCGCCGAAATGCGATTTTAG
902 CTGCCAAAAATCATGCAAAACTGAGCCAGGGCGCCGAAATGCGATTTTAG
* * * *
1914 CCAAAATCCATGATAGATACACGATTTCAGCCAAAATCTGATTCGAAAAGTTTTTTCTCAATTGT
1 CCAAAAACCGTGATAG-TACACGATTTCGGCCAAAATCTGAATCGAAAAGTTTTTTCTCAATT-T
1979 TTTTCCATAATACTCAGAAAAAATATATAAATCAACGCCAATAAAATTGAAGGGTTTTTCACGCT
64 TTTTCCATAATACTCAGAAAAAATATATAAATCAACGCCAA-AAAATTGAAGGGTTTTTCACGCT
*
2044 TCTAATATCGTTTTTACA-TTTTTTCCCGAATTTATTTCTATTTAACTCTAAACAAGATTTAGAT
128 TCTAATATCGTTTTTACATTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAGAT
* * **
2108 TCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTATATGAATATAGATATTTC
193 ACTCGTAAAAACAAAT-CTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTC
* * * *
2173 AAGGAGTCTTTCTGCCAAAAATCATTCAAAACTGAGCCGGGGCGCCAAAATGCGTTTTT-GCCCA
257 AAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTC--GACGCCGAAATGCGTTTTTAG-CCA
* * * *
2237 AAAACTGTGATAGTTAGTATACGATTTCGGCCAAAATCTGAAC-CGGCAAATTTTTTCTCATTTT
319 AAAACCGTGATAGTTAGTAAACGATTTCGGCCAAAATCTG-ACTCGGAAAATTTTTTCTCAATTT
* * *
2301 TTTTCCACAATACTC-GAAAAAATATATAATTCAACACC-AAAAAATTGAAGGGTTTTCCACGCT
383 TTTTCCATAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA-GGTTTTTCACGCT
* * ** *
2364 TCTAATATCGTTTTTCCATATTTTTTTTCCCGATTTTATTTCTATTTAACTCCAAACAAGATTCA
447 TCTAATATCGTTTTTGC----TTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTA
* * * * * * * * *
2429 GATTCTCGTAAAAAGAAATCCTTAAATCTATTGTGGCTGAGATTTGCTTCAAGGAATATATATAT
508 GATTCTCGTAAACACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATAT
* *
2494 TTCAAGGAGTCTATCTGCCAAAAATCATGCAAAACTGAGTCGGGGCGCCGAAATGCCTTTTTAGC
573 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCGCCGAAATGCATTTTTAGC
2559 CAAAAACCGTA
638 CAAAAACCGTA
2570 ATAATTAATA
Statistics
Matches: 1428, Mismatches: 145, Indels: 76
0.87 0.09 0.05
Matches are distributed among these distances:
954 77 0.05
955 399 0.28
956 122 0.09
957 118 0.08
958 249 0.17
959 165 0.12
960 11 0.01
965 5 0.00
966 168 0.12
967 97 0.07
968 17 0.01
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (951 bp):
CCAAAAACCGTGATAGTACACGATTTCGGCCAAAATCTGAATCGAAAAGTTTTTTCTCAATTTTT
TTCCATAATACTCAGAAAAAATATATAAATCAACGCCAAAAAATTGAAGGGTTTTTCACGCTTCT
AATATCGTTTTTACATTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAGATACT
CGTAAAAACAAATCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTCAAGG
AGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGACGCCGAAATGCGTTTTTAGCCAAAAACCG
TGATAGTTAGTAAACGATTTCGGCCAAAATCTGACTCGGAAAATTTTTTCTCAATTTTTTTCCAT
AATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGTTTTTCACGCTTCTAATATC
GTTTTTGCTTTTTTTCCCGAATTTATTTCTATTTAACTGTAAACAAGATTTAGATTCTCGTAAAC
ACAAATTCTTAAATCCATTGTGGATGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTT
TCTGCCAAAAATCATGCAAAACTGAGTCGGGGCGCCGAAATGCATTTTTAGCCAAAAACCGTACA
CGATTTCGGCTAAAATCTGACTCGGAAAGTTTTTTCACAATTTCTTTCCATAATACTCAGAAAAA
ATATATAATTCAACGCCAAAAAAATTGAAGGGATTTTCACGCTTCTAATATCGTTTTTCCAATTT
TTTTTACCGAATTTATTTCTATTTAACTGTAAAAAAGATTCAGATGCTCGTAAAAGCAAATCCTT
AAATCCATTGTGGATGAGAATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAA
ATCATGCAAAACTGAGCCAGGGCGCCGAAATGCGATTTTAG
Done.