Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020826.1 Corchorus olitorius cultivar O-4 contig20859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84856

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--1959
323
6.0
323
86
3
2605
33
16
14
35
1.88
12--1958
648
3.0
645
90
2
2892
33
16
14
35
1.88
9623--9687
31
2.1
31
97
0
121
23
15
33
27
1.95
19016--19069
27
2.0
26
89
3
81
29
14
7
48
1.71
26709--26735
2
13.5
2
100
0
54
51
0
0
48
1.00
28832--28894
30
2.1
30
93
0
108
31
14
12
41
1.83
30153--30209
21
2.9
19
80
10
69
35
21
7
36
1.80
30153--30211
19
3.0
19
80
9
73
33
20
8
37
1.83
48559--48599
8
5.2
8
88
5
66
87
12
0
0
0.53
48551--48603
17
3.1
18
83
8
74
86
13
0
0
0.56
48551--48603
26
2.0
26
89
7
81
86
13
0
0
0.56
48551--48599
14
3.6
14
77
5
64
87
12
0
0
0.54
55966--56029
29
2.4
27
87
10
87
25
12
12
50
1.75

Tables:   1

The End!