Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020827.1 Corchorus olitorius cultivar O-4 contig20860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36660

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12044--12261
60
3.6
60
90
1
312
36
18
17
27
1.93
12104--12206
31
3.4
31
69
10
95
35
18
20
25
1.95
12075--12232
29
5.3
28
66
11
91
34
17
18
28
1.94
12306--12473
31
5.6
30
63
18
89
31
19
15
33
1.93
12309--12469
60
2.7
60
92
1
261
30
19
14
34
1.92
12497--12530
2
17.0
2
100
0
68
50
0
0
50
1.00
14779--14839
12
5.1
12
80
7
70
22
26
27
22
1.99
16510--16548
20
2.0
20
94
0
69
56
5
0
38
1.22
19805--19848
21
2.1
21
91
0
70
18
45
13
22
1.84
20625--20666
20
2.1
20
100
0
84
47
14
9
28
1.75
20829--20919
26
3.5
26
94
5
150
52
29
7
9
1.62
20849--20932
27
3.2
26
81
6
98
59
25
7
8
1.52
27276--27303
14
2.0
14
100
0
56
42
7
42
7
1.59

Tables:   1

The End!