genome.fa.s20828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020828.1 Corchorus olitorius cultivar O-4 contig20861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  247617

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15190--15220	2	15.5	2	100	0	62	48	0	0	51	1.00
25791--25833	2	21.5	2	100	0	86	48	0	0	51	1.00
38793--38818	2	13.0	2	100	0	52	0	50	0	50	1.00
40504--40618	60	1.9	60	85	0	158	18	22	25	33	1.96
40492--40625	31	4.4	31	83	3	164	18	24	25	31	1.98
41604--41645	2	20.5	2	81	13	50	45	2	4	47	1.36
52673--52703	2	15.5	2	100	0	62	0	51	0	48	1.00
52918--53101	83	2.2	83	93	0	314	10	28	30	30	1.90
53490--53518	14	2.1	14	100	0	58	44	20	13	20	1.85
54219--54608	207	1.9	211	90	2	635	35	14	13	36	1.85
54407--57104	320	8.3	323	83	5	3239	34	16	13	35	1.88
57858--58884	31	37.0	25	78	13	629	35	20	14	29	1.92
58004--58921	31	32.0	31	80	13	821	35	20	14	30	1.92
58056--58881	87	9.6	84	78	16	708	35	19	14	30	1.92
58056--58921	118	7.5	115	82	12	813	35	19	14	30	1.92
58267--58430	16	11.1	16	60	23	65	35	17	13	32	1.89
58509--58919	56	7.1	56	74	17	356	34	19	15	31	1.92
58933--58990	30	1.9	30	83	13	75	34	12	22	31	1.91
58976--59050	33	2.3	33	81	6	82	38	17	16	28	1.91
65485--65528	3	14.7	3	90	0	61	0	25	34	40	1.56
65485--65528	15	2.9	15	93	0	70	0	25	34	40	1.56
65484--65537	12	4.5	12	90	0	72	1	22	33	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65491--65534	15	2.9	15	93	0	70	2	20	34	43	1.64
70067--70111	12	4.0	12	72	16	51	37	20	6	35	1.79
70061--70104	21	2.1	21	100	0	88	34	22	4	38	1.75
75126--75191	30	2.2	30	88	0	96	39	9	18	33	1.82
83775--83826	2	26.0	2	100	0	104	0	50	0	50	1.00
83912--84192	139	2.0	139	100	0	562	43	9	22	24	1.83
84588--84665	39	2.0	39	100	0	156	41	12	17	28	1.87
102691--102715	1	25.0	1	100	0	50	100	0	0	0	0.00
108302--108344	12	3.3	12	82	17	59	32	30	0	37	1.58
108299--108336	15	2.7	15	84	15	55	36	28	0	34	1.58
108299--108342	13	3.3	13	82	17	63	34	29	0	36	1.58
111437--111700	69	3.8	69	89	1	350	25	31	19	24	1.98
111599--111805	105	2.0	105	85	0	279	23	28	21	26	1.99
111704--112027	69	4.7	69	89	3	452	24	30	20	23	1.99
111530--111874	174	2.0	174	85	0	474	24	29	20	25	1.99
111700--112028	141	2.4	138	88	3	473	24	30	20	24	1.99
111983--112075	48	1.9	48	93	0	159	22	29	22	25	1.99
111914--112144	117	2.0	117	89	1	356	23	29	22	24	1.99
112029--112663	69	9.2	69	84	4	719	23	29	22	25	1.99
111840--112213	186	2.0	187	89	2	572	24	30	21	23	1.99
114234--114272	16	2.4	17	82	8	53	58	2	0	38	1.12
121238--121523	150	1.9	150	94	0	509	43	15	17	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123078--123256	90	2.0	88	86	4	252	39	12	15	32	1.85
123689--123723	12	2.8	13	95	4	63	0	20	0	80	0.72
123689--123723	6	5.7	6	86	6	52	0	20	0	80	0.72
135811--135845	14	2.5	14	90	0	61	68	0	8	22	1.16
136612--136820	96	2.2	92	84	3	265	42	11	14	31	1.81
137033--137179	49	3.0	49	97	0	276	33	19	11	36	1.87
137327--137388	33	1.9	33	83	3	81	54	1	19	24	1.53
141559--141635	38	2.0	38	100	0	154	53	25	0	20	1.46
153140--153174	18	1.9	18	94	0	61	20	0	31	48	1.50
178375--179146	117	6.7	117	88	3	1028	13	37	11	38	1.81
178874--179096	108	2.1	105	80	4	241	14	36	12	36	1.83
185255--185285	2	16.0	2	93	6	55	48	0	0	51	1.00
186133--186177	22	2.0	22	100	0	90	35	8	8	46	1.66
188804--189009	100	2.1	100	92	0	340	26	22	17	33	1.96
194855--194905	24	2.1	24	96	0	93	33	13	17	35	1.89
195847--195907	28	2.2	28	100	0	122	19	22	16	40	1.90
207562--207781	73	3.0	73	100	0	440	31	17	28	21	1.96
217910--217958	15	3.3	15	70	0	53	51	24	0	24	1.49
218872--218933	31	2.0	31	93	0	106	12	35	27	24	1.92
222622--222688	35	1.9	35	96	0	125	44	5	26	22	1.75
226148--226181	3	11.7	3	93	6	61	35	0	0	64	0.94
226148--226189	14	2.9	14	92	3	66	35	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228825--228863	18	2.2	18	100	0	78	66	5	15	12	1.41
230645--230690	2	23.5	2	86	4	67	2	2	47	47	1.26
240859--240897	18	2.2	18	95	0	69	35	7	33	23	1.83
241292--242679	324	4.3	326	85	6	1851	32	15	16	35	1.90
242684--243568	333	2.7	331	87	2	1240	31	14	16	37	1.90
241995--243396	718	2.0	707	85	3	1875	32	15	15	36	1.89
243607--243631	13	1.9	13	100	0	50	52	0	8	40	1.31
243391--243758	187	2.0	185	81	8	435	30	14	18	35	1.91
243575--244753	333	3.6	329	81	5	1306	33	14	16	35	1.89
243908--246952	849	3.6	846	74	10	2970	32	14	16	36	1.89
245369--246435	333	3.2	332	84	2	1484	31	14	16	36	1.90
246795--247138	186	1.8	186	84	4	471	31	15	17	34	1.92
245948--247617	517	3.2	516	92	2	2725	32	14	16	36	1.90

Tables:   1

The End!