genome.fa.s20829.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020829.1 Corchorus olitorius cultivar O-4 contig20862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126229

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527--1970	332	4.4	332	85	3	1901	31	14	17	37	1.89
527--1970	664	2.2	663	88	1	2134	31	14	17	37	1.89
2033--3126	332	3.3	332	88	2	1661	31	16	17	35	1.92
3123--5550	336	7.3	333	82	6	2729	34	14	16	34	1.89
3123--5548	670	3.6	666	85	5	3202	34	14	16	34	1.89
9246--9282	11	3.4	11	85	14	58	48	2	8	40	1.47
23527--23565	2	19.5	2	100	0	78	51	0	0	48	1.00
27089--27120	4	7.8	4	93	6	55	78	0	0	21	0.76
38184--38213	13	2.3	13	100	0	60	80	0	20	0	0.72
38180--38212	17	1.9	17	93	0	57	81	0	18	0	0.68
43106--43172	3	22.3	3	81	0	62	31	38	0	29	1.58
57062--57109	24	2.0	24	88	4	71	27	12	29	31	1.93
60612--60660	26	1.9	26	84	12	66	55	0	0	44	0.99
62663--62735	29	2.5	29	81	2	83	43	15	20	20	1.87
67725--67753	14	2.1	14	100	0	58	58	27	0	13	1.36
67851--67925	36	2.0	38	92	5	127	13	14	32	40	1.85
78423--78513	38	2.4	38	96	1	166	47	15	9	27	1.77
88668--88698	7	4.4	7	100	0	62	58	12	0	29	1.35
89093--89417	160	2.0	163	92	3	548	36	10	12	39	1.79
91261--91302	19	2.2	20	91	4	68	35	4	9	50	1.56
99828--99857	1	30.0	1	93	0	51	96	0	3	0	0.21
121827--124084	320	7.0	318	78	7	1933	35	17	14	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124221--125246	306	3.3	310	82	7	1168	36	17	13	32	1.89
125355--126229	322	2.7	321	86	3	1150	35	16	14	34	1.89

Tables:   1

The End!