Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020832.1 Corchorus olitorius cultivar O-4 contig20865, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54230

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25064--25094
15
2.1
15
100
0
62
48
12
12
25
1.77
25093--25319
63
3.6
63
94
0
373
29
22
22
25
1.99
25274--25364
45
2.0
45
100
0
182
32
26
19
20
1.97
25370--25429
30
2.0
30
100
0
120
23
30
23
23
1.99
25418--25530
57
2.0
57
94
0
199
28
23
22
26
1.99
29077--29139
32
2.0
32
96
0
117
39
20
19
20
1.92
39334--39367
5
7.0
5
86
6
52
82
0
17
0
0.67
39412--39438
13
2.1
13
100
0
54
70
0
29
0
0.88
49675--49724
26
1.9
26
91
0
82
38
8
14
40
1.75
50288--52886
323
8.0
320
86
3
3445
32
14
17
34
1.91
50288--52886
977
2.7
963
86
3
3595
32
14
17
34
1.91
52891--53767
321
2.7
323
85
2
1194
33
14
16
35
1.90
51994--54230
896
2.5
891
88
2
3245
32
15
17
34
1.91
53535--54030
250
2.0
250
88
0
742
34
16
16
32
1.92

Tables:   1

The End!