Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020833.1 Corchorus olitorius cultivar O-4 contig20866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64551
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:677 original size:323 final size:321
Alignment explanation
Indices: 1--2357 Score: 2955
Period size: 320 Copynumber: 7.3 Consensus size: 321
* * * * * *
1 TTCTGAGTATTGTGGCAAACAATTGAGAAAATACTTTTCGGGTCAGTTTTTTG-CAAAATAGTGT
1 TTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTGT
* * * * * * * * * *
65 ACTAACCTTCACAGTTTTTGACTAAAAACACATTCTGTAGCCCCGACTCAATTTTGTATGATTTT
66 ACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGGCTCAATTTTGTATGATTTT
* * * *
130 TGGCGCAAAGACTCCTTGAAATAACTATATTCATCGAAACAAATCTTAGCAATATTGGATATAAC
131 TGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGG-------
* ** *
195 ACATATAAGAATTTGTTTTTTTGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCGG
189 --ATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCAG
* * ** *
260 AAAAAAATGGGAAAACGATATTA-AAATGGTGAAAAGCCCATCAATGTTTTTGGCGTTGAATTAT
252 -AAAAAATGGAAAAACGATATTAGAAGT-GTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTAT
324 ATATTTT
315 ATATTTT
* *
331 TTCTGAGTATTGTGGAAAAAAAATTGAGAAAAAAAAATTTTTGGGTCAGTTTTTAGCCGAAATCG
1 TTCTGAGTATTGTGG-CAAAAAATTGAG--AAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCG
* * ** *
396 TGTACTAATTATCAC-GTTTTTAGCTAAAAACGCGTTCCGGAGACCCTACTTAATTTTGTATGAT
63 TGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGGCTCAATTTTGTATGAT
* * * * *
460 TTTTGGTGAAAAGAATCCTT-ATAATATTTATATTCATTGAACCAAATCTCAGCCATATTGGATA
128 TTTTGGCGCAAAGACTCCTTGA-AATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATA
* *
524 TAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAA
192 TAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCAGAAAAA
* * * *
589 ATGGAAAAACGATATTAGAAGTGTAAAAAGCCTGTCAATCTTTTTGGTGTTGAATTATATATTTT
257 ATGGAAAAACGATATTAGAAGTGTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTATATATTTT
* ** *
654 TTCTGAGTATTGTGGCAAAAAAATTGAGAAAAAAATTTTCGGGTCAATTTTTA--ATACAATCAT
1 TTCTGAGTATTGTGGC-AAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGA-AATCGT
* * *
717 GTACTAATCATCAAGGTTTTTGGCTAAAAACGCGTTCCGGAG-CCCTGACTCAATTTTGCATGAT
64 GTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCC-GGCTCAATTTTGTATGAT
*
781 TTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAAGCAAATCTCAGCCATATTGGATAT
128 TTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATAT
* * *
846 AAGGATTTGTTTTT-CGAGCATCTCAATCTTGTTTCGATTTAATTA-AAATTAATTCGGAAGAAA
193 AAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCAGAAAAAA
* * * * *** *
909 TTGAAAAACGATATTAAAAGTGAGAAAATCCCATAAATGTTTTTGGCGTTGAATTATATATTTTT
258 TGGAAAAACGATATTAGAAGTGTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTATATA-TTTT
* * *
974 TTCTGAGTATTGTGGC-CAAAATTGAGAAAAATAAATTTCGGCT-AGGTTTTTAGCCGAAAATCG
1 TTCTGAGTATTGTGGCAAAAAATTGAGAAAAA-AATTTTCGGGTCA-GTTTTTAGCCG-AAATCG
*
1037 TTTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGGCTCAATTTTGTATGAT
63 TGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGGCTCAATTTTGTATGAT
* * * ** *
1102 TTTTGGCGCAAAGACTCCTTAAAATATCTAAATTTATTAAATCAAATCTCAGCCATATTGGATAT
128 TTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATAT
* ** *
1167 AAGGATTTGTTTTTACAAAAATCTCAATCTTG-TTTGATTTAATTAGAAATTAATTCATAAAAAA
193 AAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTC--AGAAAA
* * * *
1231 AATGGAAAAACGATATTAGAAGAGTGAAAAGCCCGCCAATGTTTTTGGCGTTGAACTATAAATTT
256 AATGGAAAAACGATATTAGAAGTGTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTATATATTT
1296 T
321 T
* * ** *
1297 TTATGAGTATTGTGGTAAAAAATTGAGAAAAAAAATTTTTAGGTTAGTTTTTAGCCGAAATCGTG
1 TTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTG
* * * * *
1362 -ACCTAATTATCACGGTTTTCGGCTAAAAACGCGTTCCGGAGATCCC-GCTTATTTTTGTACGAT
65 TA-CTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGA-CCCGGCTCAATTTTGTATGAT
* * * *
1425 TTTTGGCGAAAAGACTCCTTAAAATATCTATATTCATTGAACCAAATCTCAACCATATTGGATAT
128 TTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATAT
* * *
1490 AAGGATTTGTTTTTACGAGTATCTCAATCTTGTTTTGATTTAATTAGCAATTAATTTAGAAAAAA
193 AAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCAGAAAAAA
* * * *
1555 T--AAAAATGATCTTAGAAGCGTGAAAAGCCCGCCAATATTTTTGGTGTTGAATTATATATTTT
258 TGGAAAAACGATATTAGAAGTGTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTATATATTTT
* * * * *
1617 TTCTAAGTATTGTGGCAAAAAATTAAGAGAAAAATTTTCGGGTCA---ATTAGCTGAAATCGTGT
1 TTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTGT
* * * *
1679 ACTAATCATCACAGTTTTTGACTAAAAACGCGTTTCGGAGACTCGGCTCAATTTTGTATGA-TTT
66 ACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGGCTCAATTTTGTATGATTTT
* * * * * *
1743 TGGCGCATAGACTCCTTCAAATATCTAAATTTATCGTATCAAATCTCAGCCATATTGGATATAAG
131 TGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATATAAG
* *
1808 GATTTGTTTTTACGAGCATCTCAATCTTG-TTTGATTTAAGTAGAAATTAATTCATAAAAAAATG
196 GATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCA-GAAAAAATG
* * * *
1872 AAAAAATGATATTAGAAGCGTGAAAAGCCTGCCAATGTTTTTGGTGTTGAATTATATATTTT
260 GAAAAACGATATTAGAAGTGTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTATATATTTT
* *
1934 TTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAGTTTTCGGGTCAGTTTTTAGCTGAAATCGTGT
1 TTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTGT
* * *
1999 ACTAACCATCACGGTTTTTGGCTAAGAACGCGTTCCGGAG-CCTCGGCTCAATTTTGCATGATTT
66 ACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACC-CGGCTCAATTTTGTATGATTT
2063 TTGGCGCAAAGACT-CTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATATAA
130 TTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATATAA
*
2127 GGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATTCAGAAAAAAT-
195 GGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCAGAAAAAATG
* * * * *
2191 -AAAAACTATCTTAGAAGAGGGAAAAGCCCGCCAATCTTTTTGGTGTTGAATTATATATTTTT
260 GAAAAACGATATTAGAAGTGTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTATATA-TTTT
** * * * *
2253 TTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACCTCTCGGGACAGTTTTTAGCTGAAAATAGTG
1 TTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCG-AAATCGTG
* *
2318 TACTAACCATCACGGTTTTTGGCTAAAAACGCTTTCCGGA
65 TACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGA
2358 TTGGATATAA
Statistics
Matches: 1780, Mismatches: 206, Indels: 92
0.86 0.10 0.04
Matches are distributed among these distances:
314 22 0.01
315 96 0.05
316 62 0.03
317 100 0.06
318 65 0.04
319 154 0.09
320 343 0.19
321 319 0.18
322 38 0.02
323 250 0.14
324 169 0.09
325 6 0.00
330 15 0.01
331 10 0.01
332 1 0.00
333 112 0.06
334 18 0.01
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (321 bp):
TTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTGT
ACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGGCTCAATTTTGTATGATTTT
TGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGGATATAAG
GATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATTCAGAAAAAATGG
AAAAACGATATTAGAAGTGTGAAAAGCCCGCCAATGTTTTTGGTGTTGAATTATATATTTT
Found at i:2548 original size:241 final size:240
Alignment explanation
Indices: 2116--2597 Score: 691
Period size: 241 Copynumber: 2.0 Consensus size: 240
2106 TCTCAGCCAT
* *
2116 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATT
* * *
2181 CAGAAAAAATAAAAACTATCTTAGAAGAGGGAAAAGCCCGCCAATCTTTTTGGTGTTGAATTATA
66 CAGAAAAAATAAAAACGATATTAGAAGAGGGAAAAGCCCGCCAATCTGTTTGGTGTTGAATTATA
* * * *
2246 TATTTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACCTCTCGGGACAGTTTTTAGCTGAA
131 TATTTTTTTCTCAGTATTGTGCCAAAAAATTGAGAAAAAACCTCTCGAGACAGTCTTTAGCTG-A
* *
2311 AATAGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCTTTCCGG
195 AATAGTGTACTAACCATCACGGGTTTTGGCTAAAAACGCGTTCCGG
2357 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATT
* * * ****
2422 C-GAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGGCTTTTAATCTGTTTGGTGTTGAATT
66 CAG-AAAAAAT--AAAAACGATATTAGAAGAGGGAAAAGCCCGCCAATCTGTTTGGTGTTGAATT
** * *
2486 ATATA-TTTTTTCTCAGTATTGTGCCAAAAAATTGAG-AAAAAGTTTTCGAGTCAGTCTTTAGCT
128 ATATATTTTTTTCTCAGTATTGTGCCAAAAAATTGAGAAAAAACCTCTCGAGACAGTCTTTAGCT
* *
2549 GAAATCGTGTACTAACCATCACGGGTTTTGGCTAAGAACGCGTTCCGG
193 GAAATAGTGTACTAACCATCACGGGTTTTGGCTAAAAACGCGTTCCGG
2597 A
1 A
2598 GACCCGGCTT
Statistics
Matches: 214, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
240 45 0.21
241 93 0.43
242 29 0.14
243 47 0.22
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (240 bp):
ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATT
CAGAAAAAATAAAAACGATATTAGAAGAGGGAAAAGCCCGCCAATCTGTTTGGTGTTGAATTATA
TATTTTTTTCTCAGTATTGTGCCAAAAAATTGAGAAAAAACCTCTCGAGACAGTCTTTAGCTGAA
ATAGTGTACTAACCATCACGGGTTTTGGCTAAAAACGCGTTCCGG
Found at i:2899 original size:561 final size:560
Alignment explanation
Indices: 1796--2918 Score: 1837
Period size: 561 Copynumber: 2.0 Consensus size: 560
1786 TCTCAGCCAT
1796 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTGATTTAAGTAGAAATTAATTC
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTGATTTAAGTAGAAATTAATTC
* * * *
1861 ATAAAAAAATGAAAAAATGATATTAGAAGCGTGAAAAGCCTGCCAATGTTTTTGGTGTTGAATTA
66 AGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAGCCTGCCAATCTGTTTGGTGTTGAATTA
* * * *
1926 TATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAGTTTTCGGGTCAGTTTTTAGCTGA
131 TATATTTTTTCTCAGTATTGTGCCAAAAAATTGAGAAAAAAGTTTTCGAGTCAGTCTTTAGCTGA
*
1991 AATCGTGTACTAACCATCACGGTTTTTGGCTAAGAACGCGTTCCGGAGCCTCGGCTCAATTTTGC
196 AATCGTGTACTAACCATCACGGGTTTTGGCTAAGAACGCGTTCCGGAGCCTCGGCTCAATTTTGC
*
2056 ATGATTTTTGGCGCAAAGACTCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGG
261 ATGATTTTTGGCGCAAAGACTCTTAAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGG
2121 ATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATTCAGAA
326 ATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATTCAGAA
*
2186 AAAATAAAAACTATCTTAGAAGAGGGAAAAGCCCGCCAATCTTTTTGGTGTTGAATTATATATTT
391 AAAATAAAAACGATCTTAGAAGAGGGAAAAGCCCGCCAATCTTTTTGGTGTTGAATTATATATTT
* *
2251 TTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACCTCTCGGGACAGTTTTTAGCTGAAAATAG
456 TTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACATCTCGGGACAATTTTTAGCTGAAAATAG
* *
2316 TGTACTAACCATCACGGTTTTTGGCTAAAAACGCTTTCCGG
521 TGTACTAACCATCAC-GTTTTTGGATAAAAACGCGTTCCGG
*
2357 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTT-GATTTAAGTAGAAATTAATT
* * * ***
2422 C-GAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGGCTTTTAATCTGTTTGGTGTTGAATT
65 CAGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAGCCTGCCAATCTGTTTGGTGTTGAATT
2486 ATATATTTTTTCTCAGTATTGTGCCAAAAAATTGAG-AAAAAGTTTTCGAGTCAGTCTTTAGCTG
130 ATATATTTTTTCTCAGTATTGTGCCAAAAAATTGAGAAAAAAGTTTTCGAGTCAGTCTTTAGCTG
*
2550 AAATCGTGTACTAACCATCACGGGTTTTGGCTAAGAACGCGTTCCGGAGACC-CGGCTTAATTTT
195 AAATCGTGTACTAACCATCACGGGTTTTGGCTAAGAACGCGTTCCGGAG-CCTCGGCTCAATTTT
* *
2614 GTATGATTTTTGGCGGAAAGACTCCTTAAAATATCTATATTCATCGAACCAAATCTCAGCCATAT
259 GCATGATTTTTGGCGCAAAGACT-CTTAAAATATCTATATTCATCGAACCAAATCTCAGCCATAT
2679 TGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATTCA
323 TGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATTCA
* *
2744 GAAAAAAAATTAAAAAACGATCTTAGAAGCGTGAAAAGCCCGCCAATCTTTTTGGTGTTGAATTA
388 G--AAAAAA-T-AAAAACGATCTTAGAAGAGGGAAAAGCCCGCCAATCTTTTTGGTGTTGAATTA
* *
2809 TATA-TTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAA-ATTTCGGGTCAATTTTTAGCTG
449 TATATTTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACATCTCGGGACAATTTTTAGCTG
* *
2872 -AAATCGTGTACTAATCATCGA-GTTTTTGGATAAAAACGCGTTCCGG
514 AAAATAGTGTACTAACCATC-ACGTTTTTGGATAAAAACGCGTTCCGG
2918 A
1 A
2919 GCCCCGACTC
Statistics
Matches: 523, Mismatches: 31, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
560 106 0.20
561 263 0.50
562 37 0.07
563 25 0.05
564 38 0.07
565 54 0.10
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (560 bp):
ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTGATTTAAGTAGAAATTAATTC
AGAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAGCCTGCCAATCTGTTTGGTGTTGAATTA
TATATTTTTTCTCAGTATTGTGCCAAAAAATTGAGAAAAAAGTTTTCGAGTCAGTCTTTAGCTGA
AATCGTGTACTAACCATCACGGGTTTTGGCTAAGAACGCGTTCCGGAGCCTCGGCTCAATTTTGC
ATGATTTTTGGCGCAAAGACTCTTAAAATATCTATATTCATCGAACCAAATCTCAGCCATATTGG
ATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATTCAGAA
AAAATAAAAACGATCTTAGAAGAGGGAAAAGCCCGCCAATCTTTTTGGTGTTGAATTATATATTT
TTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACATCTCGGGACAATTTTTAGCTGAAAATAG
TGTACTAACCATCACGTTTTTGGATAAAAACGCGTTCCGG
Found at i:3359 original size:322 final size:321
Alignment explanation
Indices: 2357--7902 Score: 7190
Period size: 323 Copynumber: 17.4 Consensus size: 321
2347 CGCTTTCCGG
*
2357 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* *** *
2422 C-GAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGGCTTTTAATCTGTTTGGTGTTGAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* * * * * *
2486 ATATATTTTTTCTCAGTATTGTGCCAAAAAATTGAGAAAAAGTTTTCGAGTCAGTCTTTAGCTGA
131 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTGA
* * * * *
2551 AATCGTGTACTAACCATCACGGGTTTTGGCTAAGAACGCGTTCCGGAGACCCGGCTTAATTTTGT
196 AATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTTGT
* *
2616 ATGATTTTTGGCGGAAAGACTCCTTAAAATATCTATATTCATCGAACCAAATCTCAGCCAT
261 ATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
*
2677 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* ** * * *
2742 CAGAAAAAAAATTAAAAAACGATCTTAGAAGCGTGAAAAGCCCGCCAATCTTTTTGGTGTTGAAT
66 C-GGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAAT
*
2807 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTCGGGTCAATTTTTAGCTG
130 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTG
* *
2872 AAATCGTGTACTAATCAT--CGAGTTTTTGGATAAAAACGCGTTCCGGAGCCCCGACTCAATTTT
195 AAATCGTGTACTAATCATCACG-GTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTT
* * * *
2935 AG-AAGATTTTTGGCGCAAAGACACCTTGAAATATCTATATTCATCGAAGCAAATCTCTGCCAT
259 -GTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
*
2998 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTAGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* *
3063 CGGAAAAAAATGGTAAAACGATATTAGAAGTGTGAAAAGCCTGTCAATCTTTTTGGTGTTGAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* *
3128 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAACCTTTTCGGGTCAGTTTTTAGCTG
131 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAA-ATTTTCGGGTCAATTTTTAGCTG
* * ** *
3193 AAATCGTGTACTAATAATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGTTTAATTTTG
195 AAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTTG
* * *
3258 CATGATTTTTGGCGCAAAGTCTCCTTGAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
260 TATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
* * * * * * *
3320 ATTAGATATAAAGATTTATTTTTTCGAGCATCTCAATCTTGTTTCGATTTAATTAAAAATAAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* *
3385 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGTCAATCTTTTTGTTGTTGAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* * * * *
3450 ATATATTTTCTCGGAGTATTGTGGCAAAAAATCGAGAAAAAAATTTTCGGGTCAGTTTTTATCTG
131 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAATTTTCGGGTCAATTTTTAGCTG
*
3515 AAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCG-TCCGGAGCCCCGACTCAATTTT
195 -AAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTT
* *
3579 GCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
259 GTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
* *
3642 ATTGGATATAAGGATTTGTTTTT-CGAGCATCTCAATCTTGTTTCGATTTAATTAAAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* * * **** * *
3706 CGG-AAAAAATGGGAAAACGATATTAAAAGTGTGAAAATCCCATAAATGTTTTTGGCGTTGAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* * *
3770 AT-TTTTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTTCGGGTCAGTTTTTAGC-
131 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAA-TTTTCGGGTCAATTTTTAGCT
* * * *
3833 -----C--G-A--AA--A-C-C-G--TGT-ACT--AAACGCGTTCCGGAGACTCGACTCAATTTG
194 GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTT
* * * * * * *
3878 GAATGATTTTTGGCACAAAGACACCTTAAAATATCTAAATTTATCGAATCAAATCTCAGTCAT
259 GTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
3941 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
** * * * * * * *
4006 CATAAAAAAAATGAAAAAATGATATTAGAAGCGTGAAAAGCCCGCCAATGTTTTTGGCGTTGAAC
66 C-GGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAAT
* * * * *
4071 TATATA-TTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGATCATTTTTTAACAG
130 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTG
* * * *
4135 AAATCGTGTACTAATCATCACGGGTTTTGGCTAAAAACGCGTTCCGAAGACCCGTCTTAATTTTG
195 AAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTTG
* * * * * *
4200 TTTGATTTTTGGAGAAAAGACTCTTTTAAATATCTATATTCATCGAACCAAATCTCAGCCAT
260 TATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
* *
4262 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTAAATTAGCAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* * * * * * * *
4327 CAGAAAAAAAT-AAAAAACTATCTTAGAAGAGGGAAAAGCCCGCCAATCTTTTTGTTGTTGAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* * * *
4391 ATATATTTTTTCAGAGCATTGTTGCAAAAGAATTGAGAAAAAAATTTCGGGTCAATTTTTAGC--
131 ATATATTTTTTCTGAGTATTGTGGCAAAA-AATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTG
* * *
4454 ----C--G-A--AA--AT--C-G--TGT-ACT--AAACGCGTTCCGGAGACCCGGCTCAATTTTG
195 AAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTTG
* * *
4500 CATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGATGCAAATCTCAGCCAT
260 TATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
* *
4562 ATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* ** * * *
4627 CAGAAAAAAAATTAAAAAACGATCTTAGAAGTGTGAAAAGCCCGCCAATCTTTTTGGTGTTTAAT
66 C-GGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAAT
* * *
4692 TATATATTTTTTCTGAGCATTGTTGCAAAAGAATTGAGAAAAAAAATTTTCGGGTCAATTTTTAC
130 TATATATTTTTTCTGAGTATTGTGGCAAAA-AATTGAG--AAAAAATTTTCGGGTCAATTTTTAG
* * * * *
4757 CTGAAATCGTGTAATAATCATCACGGTTTTTGGATAAAAACGCGTTCTGGAGCCCCGACTGAATT
192 CTGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATT
** * * *
4822 TTACATAATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
257 TTGTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
*
4887 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* *
4952 CAGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGTCAATCTTTTTGGTGTTGAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* *
5017 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAAAAATTTCGGGT-AAGTCTTTAG
131 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGA-G--AAAAAATTTTCGGGTCAA-TTTTTAG
* * * * * *
5081 CCGAAATTGTGTACTAATCATCACGGGTTTTGGCTAAAAGCGCGTTCCGGAGACCCGGCTTAATT
192 CTGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATT
* * *
5146 TTGTATGATTTTTGGTC-AAAAGACTCCTTAAAATATCTATATTCATTGAACCAAATCTCAGCCA
257 TTGTATGATTTTTGG-CGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCA
5210 T
321 T
* * *
5211 ATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATATTGTTTTGATTTAATTAGCAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* ** * * * *
5276 CAGAAAAAAATTCAAAAACGATCTTAGAAGCGTGAAAAGCCCGCCAATCTTTTTGGTGTTTAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* *
5341 ATATA-TTTTTCTGAGTATTGTCGCAAAAGAATTGATAAAAAAAATTTT-GGGTCAATTTTTAGC
131 ATATATTTTTTCTGAGTATTGTGGCAAAA-AATTG--AGAAAAAATTTTCGGGTCAATTTTTAGC
* * * *
5404 ------C--G-A--AA--AT--C-G--TGT-ACT--AAACGCGTTCTGGAGACCCGGCTCAATTT
193 TGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTT
* * * ** * * *
5448 TGTTTGATTTTTGGCGCAAAGACACCTTAAAATATCTAAATTTGTCGAATCATATCTTAGCCAT
258 TGTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
5512 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTG-TTTGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
** * ** * *
5576 CATAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCACCAATGTTTTTGGCGTTGAAT
66 C-GGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAAT
*
5641 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTCGGGTCAATTTTTAGCTG
130 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTG
* * *
5706 AAATCGTGTACTAATCATCACGGTTTTTGGATAAAAACGCGTTCCGGAGCCCCGACTCAATTTTA
195 AAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTTG
* * *
5771 TAAGATTTTTGGCGCAAAGACACCTTGAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
260 TATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
** * *
5833 ATTGTCTATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTATAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* * *
5898 CGGAAAAAAATGGAAAAACGATATTAGAAATGTGAAAATCCTGTCAATCTTTTTGGTGTTGAATT
66 CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
* *
5963 ATATA-TTTTTCTGAGTATTGCGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTTA
131 ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTGA
*
6027 AATCGTG---T-A-CATCACGGTTTTTGGCTAAAAACGCGTTCCGAAG-CCCAGACTCAATTTTG
196 AATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCC-GACTCAATTTTG
** *
6086 CCTGATTTTTGGCGCAAAGACTCCTTAAAATATCTACATTCATCGAAGCAAATCTCAGCCAT
260 TATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
*
6148 ATTGGATATAAGGATTTGTTTTTACCAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
** * * * *
6213 CGGAAAAAAAATTAAAAAAACGATGTTAGAAGCGCGAAAAGCCTGTCAATCTTTTTGGTGTTGAA
66 CGG-AAAAAAA-TGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAA
* * ** * * * *
6278 TAATATATTTTTTCTGAGTATTGTGGGAAAAAATTGAGAAAATTTTTTCGGGTTAGTCTTTAGCC
129 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCT
* * * * ** * * *
6343 GAAATTGTGTACTAATCATCATGGGTTTTGCCTAAAAATACGTTCCGGAGACCTGGCTTAATTTT
194 GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTT
* *
6408 GTATGATTTTTGGCGAAAAGACTCCTTAAAATATCTATATTCATCGAACCAAATCTCAGCCAT
259 GTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
* * * *
6471 ATTGGATATAAAGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTCAATTAGCAGTTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* * * * *
6536 CAGAAAAAAAAAT-TAAAAACCAATCTTAGAAGCGTGAAAAGCCTGCCAATCTTTTTGGTGTTGA
66 C-G-GAAAAAAATGGAAAAA-CGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGA
*
6600 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAAATTTCGGGTCAATTTTTAG
128 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAATTTTCGGGTCAATTTTTAG
* * * * * *
6665 CTGACATCGTGTGCTAAACATCACGGTTTTTAGATAAAAACGCGTTCCGGAGCCCCGACTCAATT
192 CTGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATT
** * * * *
6730 TTACAAGATTTTTGGCGCAAAGACACCTTGAAATATCTATATTCATCGAAGCAAATCTCAGTCAT
257 TTGTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
* ** *
6795 ATTGTATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTCAATTTTATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* * *
6860 CGGAAAAAAAATGGAAAAACGATATTAGAAATGTGAAAATCCTGTCAATCTTTTTGGTGTTGAAT
66 CGG-AAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAAT
* *
6925 TATATATTTTTTCTGAGTATTGCGGCAAAAAATTGAGAAAACAATTTTCGGGTTAATTTTTAGCT
130 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAA-AATTTTCGGGTCAATTTTTAGCT
* * *
6990 GAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGAAGCCCCGACTCAATTTT
194 GAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTT
* *
7055 GCATGATTTTTGGCGCAAAGACTCCTTAAAATATCTACATTCATCGAAGCAAATCTCAGCCAT
259 GTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
* * *
7118 ATTGAATATAAGGATTCGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
** * *** *
7183 CGGAAAAAAAATTAAAAAACGATCTTAGAAGCACGAAAAGCCTGTCAATCTTTTTGGTGTTGAAT
66 CGG-AAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAAT
* *
7248 TATATATTTTTTCTGAGTATTGCGCCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTG
130 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTG
* * * *
7313 AAACCGTGTACT-ACCATCACGGTTTTTGGCTAAAAACGTGTTCCAGAGACCCGACTCAATTTTG
195 AAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTTG
* * *
7377 TATGATTTTTGGCGCAAAGACTCCTTAAAATATCTAAATTTATCGAATCAAATCTCAGCCAT
260 TATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
*
7439 ATTGGATATAAGGATTTGTTTTTACGAGCAACTCAATCTTG-TTTGATTTAATTAGAAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
** ** * ** * *
7503 CATAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAATCCCACCAATGTTTTTGGGGTTGAAT
66 C-GGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAAT
* *
7568 TATATATTTTTTCTGATTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGT-ATGTTTTTAGC
130 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAATTTTCGGGTCA-ATTTTTAGC
* * *
7632 TGAAATCGTGTAATAATCATCACGGTTTTTCGCTAAAAACGCGTTCCGGAGACCCTG-CTTAATT
193 TGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCC-GACTCAATT
** *
7696 TTGTATGATTTTTGGCAAAAAGTCTCCTTAAAATATCTATATTCATCGAA-CAAAATCTCAGCCA
257 TTGTATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGC-AAATCTCAGCCA
7760 T
321 T
*
7761 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGCAATTAATT
1 ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
* ** *
7826 CAGAATAAAAATTAAAAAACGATCTTAGAAGCT-TGAAAAGCCTGCCAATCTTTTTGGTGTTGAA
66 CGGAA-AAAAATGGAAAAACGATATTAGAAG-TGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAA
7890 TTATATATTTTTT
129 TTATATATTTTTT
7903 TGGTCAATTT
Statistics
Matches: 4601, Mismatches: 502, Indels: 243
0.86 0.09 0.05
Matches are distributed among these distances:
298 7 0.00
299 107 0.02
300 244 0.05
301 198 0.04
302 191 0.04
303 6 0.00
304 27 0.01
305 2 0.00
306 5 0.00
307 1 0.00
308 6 0.00
309 4 0.00
310 4 0.00
311 7 0.00
312 2 0.00
313 7 0.00
314 5 0.00
315 167 0.04
316 10 0.00
317 55 0.01
318 60 0.01
319 88 0.02
320 436 0.09
321 764 0.17
322 719 0.16
323 786 0.17
324 543 0.12
325 149 0.03
326 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (321 bp):
ATTGGATATAAGGATTTGTTTTTACGAGCATCTCAATCTTGTTTTGATTTAATTAGAAATTAATT
CGGAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAGCCTGCCAATCTTTTTGGTGTTGAATT
ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATTTTCGGGTCAATTTTTAGCTGA
AATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGACCCGACTCAATTTTGT
ATGATTTTTGGCGCAAAGACTCCTTAAAATATCTATATTCATCGAAGCAAATCTCAGCCAT
Found at i:8949 original size:318 final size:317
Alignment explanation
Indices: 7904--9132 Score: 1183
Period size: 318 Copynumber: 3.9 Consensus size: 317
7894 ATATTTTTTT
* * * * *
7904 GGTCAATTTTTAGCTGAAATCGTGTACTAATCATCACGGTTTTTGGA-TAAAAACGCGTTTCG-G
1 GGTCAGTTTTTAGCCGAAATC-TGTACTAACCATCACAG-TTTT-GACTAAAAACGC-TTCCGAG
* * * *
7967 AGCCCCGACTCAATTTTGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAA
62 -GCCCTGGCTCTATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAA
* * *
8032 GCAAATCTT-AGCCATATTGGATATAATGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATT
126 GCAAAT-TTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAGCATATCAATCTTGTTTCGATT
* * * * *
8096 TAATTAGAAATTAATTCG--GAAAAAATGGATAAACGATACTAGAAGTGTAAAAAGCCCGTCAAT
190 TAATTAGAAATTAATTCGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAAT
* * * * * *
8159 CTTTTGGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTC
255 CTTTTTGGCGTTGAATTATAT-TTTTTTTTTAATATTGT-GCAAAAAATTGAGAAAAAAA-TTTA
8224 G
317 G
** *
8225 GGTCAGTTTTTAGCCGAAATC-GTA-T-ACTCATCACAGTTTTTTCCTAAAAACGCGTTTCGGAG
1 GGTCAGTTTTTAGCCGAAATCTGTACTAAC-CATCACAG-TTTTGACTAAAAACGC--TTCCGAG
* * * * * *
8287 TCCCCGG-TCTATTTTGCATGATCTTTGGCGCAAAAATTACTTGAAATATCTATATTCATCGAAG
62 GCCCTGGCTCTATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAAG
* * * *
8351 CAAATCTCAG-CAATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCCTGTTTCGATTT
127 CAAATTTCAGCCAA-ATTGGATATAAGGATTTGTTTTTACGAGCATATCAATCTTGTTTCGATTT
* * * *
8415 TATTAGAAACTAATTC-AGAAAAAAATGGAAAAACGATATCAGAAGCGTGAAAAGCCCGTCAATC
191 AATTAGAAATTAATTCGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATC
* * ** *
8479 TTTTTGGCGGTGAATTATATTTTTTTTCTGT-CTATTGTGCCCGAAAATTGAGAAAAAAAAATTC
256 TTTTTGGCGTTGAATTATATTTTTTTT-T-TAATATTGTG-CAAAAAATTGAG--AAAAAAATTT
8543 A-
316 AG
* * * * *
8544 GGCCAATTTTTAGCTGAAATCGTGTACTAACCATCACGGTGTTTGGCT--AAA-G-TTCCG-GAG
1 GGTCAGTTTTTAGCCGAAATC-TGTACTAACCATCACAGT-TTTGACTAAAAACGCTTCCGAG-G
* * * *
8604 CCCTGGCTCAATTTTGCATGATTTTTGGCGCAAAGACTCCATGCAATATCTATATTCATCGAATC
63 CCCTGGCTCTATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAAGC
* * * * *
8669 AAATTTCAGCCAAATTGGATATGAGGATTTTTTTTTACGAGTATATGAATCTTGTTTCTATTTAA
128 AAATTTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAGCATATCAATCTTGTTTCGATTTAA
* * * *
8734 TTAGAATTTAATTCGAAAAAAAAATGGAAAAACGATATTATAAGCGTGCAAAGCCCGTTAATCTT
193 TTAGAAATTAATTCGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTT
*
8799 TTTGGCGTTGAATT-T-TTTTTTTTTTAATATTGTAGCAAAAAATTGAG-AAAAACTTTAG
258 TTTGGCGTTGAATTATATTTTTTTTTTAATATTGT-GCAAAAAATTGAGAAAAAAATTTAG
* *
8857 GGTTAGTTTTTAGCCGAAATCATGTACTAACCATCATAGTTTTGAACTAAAAACGCCTTCCGAGG
1 GGTCAGTTTTTAGCCGAAATC-TGTACTAACCATCACAGTTTTG-ACTAAAAACG-CTTCCGAGG
* * * ** * * * * **
8922 CCGTGGCTCTGTTTTGCATGGTTTTTGGCGCCGAGACTCCTTGAAACATCTTTCTT-AGTCTATT
63 CCCTGGCTCTATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCA-TCGAAG
** * * ** *
8986 CAAATTTCAGCCTCATTGGATTTAAGGATTTGCTTTTACTTGCATCA-GAATCTTGTTTCGATTT
127 CAAATTTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAGCAT-ATCAATCTTGTTTCGATTT
** * * * * ** *
9050 AAACATAAATTAATTCAAAAAAGAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTTCTTCAA
191 AATTAGAAATTAATTCGAAAAA-AAAAT-GGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAA
9115 TCTTTTT-GCGTTGAATTA
254 TCTTTTTGGCGTTGAATTA
9133 CATAAATTTT
Statistics
Matches: 748, Mismatches: 123, Indels: 75
0.79 0.13 0.08
Matches are distributed among these distances:
312 12 0.02
313 35 0.05
314 1 0.00
315 21 0.03
316 19 0.03
317 119 0.16
318 333 0.45
319 121 0.16
320 42 0.06
321 30 0.04
322 13 0.02
323 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (317 bp):
GGTCAGTTTTTAGCCGAAATCTGTACTAACCATCACAGTTTTGACTAAAAACGCTTCCGAGGCCC
TGGCTCTATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAAGCAAA
TTTCAGCCAAATTGGATATAAGGATTTGTTTTTACGAGCATATCAATCTTGTTTCGATTTAATTA
GAAATTAATTCGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTT
GGCGTTGAATTATATTTTTTTTTTAATATTGTGCAAAAAATTGAGAAAAAAATTTAG
Found at i:9176 original size:635 final size:634
Alignment explanation
Indices: 7907--9174 Score: 1432
Period size: 635 Copynumber: 2.0 Consensus size: 634
7897 TTTTTTTGGT
* * *
7907 CAATTTTTAGCTGAAATCGTGTACTAATCATCACGGTTTTTGGATAAAAACGCGTTTCGGAGCCC
1 CAATTTTTAGCTGAAATCGTGTACTAACCATCACGGTGTTTGGAT-AAAA--CGTTCCGGAGCCC
*
7972 CGACTCAATTTTGCATGATTTTTGACGCAAAGACTCCTTGAAATATCTATATTCATCGAAGCAAA
63 CGACTCAATTTTGCATGATTTTTGACGCAAAGACTCCATGAAATATCTATATTCATCGAAGCAAA
* * *
8037 TCTTAGCCATATTGGATATAATGATTTGTTTTTACGAGCATCTCAATCTTGTTTCGATTTAATTA
128 TCTTAGCCAAATTGGATATAAGGATTTGTTTTTACGAGCATATCAATCTTGTTTCGATTTAATTA
* * *
8102 GAAATTAATTCGGAAAAAATGGATAAACGATACTAGAAGTGTAAAAAGCCCGTCAATCTTTTGGG
193 GAAATTAATTCGAAAAAAATGGAAAAACGATACTAGAAGCGTAAAAAGCCCGTCAATCTTTTGGG
* * * * *
8167 TGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAATTTTCGGGTCAGT
258 CGTTGAATTATATATTTTTTCTGAATATTGTAGCAAAAAATTGAG-AAAAAACTTTAGGGTCAGT
*** * * *
8232 TTTTAGCCGAAATCGTATACTCATCACAGTTTTTTCCTAAAAACGCGTTTCGGAGTCCCCGGTCT
322 TTTTAGCCGAAATCGTATACTCATCACAGTTTTGAACTAAAAACGCGCTTCCGAGGCCCCGGTCT
* *
8297 ATTTTGCATGATCTTTGGCGCAAAAATTACTTGAAATATCTATATTCATCGAAGCAAATCTCAGC
387 ATTTTGCATGATCTTTGGCGCAAAAACTACTTGAAACATCTATATTCATCGAAGCAAATCTCAGC
* * * * **
8362 AATATTGGATATAAGGATTTGTTTTTTCGAGCATCTCAATCCTGTTTCGATTTTATTAGAAACTA
452 AATATTGGATATAAGGATTTGCTTTTACGAGCATCACAATCCTGTTTCGATTTAAACAGAAACTA
* *
8427 ATTCAGAAAAAAATGGAAAAACGATATCAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGGTGA
517 ATTCAAAAAAAAATGGAAAAACGATATCAAAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGGTGA
* * * *
8492 ATTATATTTTTTTTCTGTCTATTGTGCCCGAAAATTGAGAAAAAAAAATTCAGGC
582 ATTATAATTTTTATCAGTCTATTGTGCCCAAAAATTGAG--AAAAAAATTCAGGC
* * *
8547 CAATTTTTAGCTGAAATCGTGTACTAACCATCACGGTGTTTGGCT-AAA-GTTCCGGAGCCCTGG
1 CAATTTTTAGCTGAAATCGTGTACTAACCATCACGGTGTTTGGATAAAACGTTCCGGAGCCCCGA
* * *
8610 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCATGCAATATCTATATTCATCGAATCAAAT-T
66 CTCAATTTTGCATGATTTTTGACGCAAAGACTCCATGAAATATCTATATTCATCGAAGCAAATCT
* * * * *
8674 TCAGCCAAATTGGATATGAGGATTTTTTTTTACGAGTATATGAATCTTGTTTCTATTTAATTAGA
131 T-AGCCAAATTGGATATAAGGATTTGTTTTTACGAGCATATCAATCTTGTTTCGATTTAATTAGA
* * * ** * *
8739 ATTTAATTCGAAAAAAAAATGGAAAAACGATATTATAAGCGTGCAAAGCCCGTTAATCTTTTTGG
195 AATTAATTCG--AAAAAAATGGAAAAACGATACTAGAAGCGTAAAAAGCCCGTCAATCTTTTGGG
* * *
8804 CGTTGAATT-T-T-TTTTTTTTTAATATTGTAGCAAAAAATTGAG-AAAAACTTTAGGGTTAGTT
258 CGTTGAATTATATATTTTTTCTGAATATTGTAGCAAAAAATTGAGAAAAAACTTTAGGGTCAGTT
* **
8865 TTTAGCCGAAATCATGTACTAAC-CATCATAGTTTTGAACTAAAAACGC-CTTCCGAGGCCGTGG
323 TTTAGCCGAAATC--GTA-T-ACTCATCACAGTTTTGAACTAAAAACGCGCTTCCGAGGCCCCGG
* * * ** * * * * * ** *
8928 CTCTGTTTTGCATGGTTTTTGGCGCCGAGACTCCTTGAAACATCTTTCTT-AGTCTATTCAAATT
384 -TCTATTTTGCATGATCTTTGGCGCAAAAACTACTTGAAACATCTATATTCA-TCGAAGCAAATC
* * ** * * *
8992 TCAGC-CTCATTGGATTTAAGGATTTGCTTTTACTTGCATCAGAATCTTGTTTCGATTTAAACAT
447 TCAGCAAT-ATTGGATATAAGGATTTGCTTTTACGAGCATCACAATCCTGTTTCGATTTAAACAG
* * * ** *
9056 AAATTAATTCAAAAAAGAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTTCTTCAATCTTTT
511 AAACTAATTC-AAAAA-AAAAT-GGAAAAACGATATCAAAAGCGTGAAAAGCCCGTCAATCTTTT
* * *
9121 T-GCGTTGAATTACATAAATTTTTATGAGTGCT-TT-TG-CCAAAAATTGAGGAAAAA
573 TGGCGGTGAATT--AT-AATTTTTATCAGT-CTATTGTGCCCAAAAATTGAGAAAAAA
9175 TTTTTCAGGT
Statistics
Matches: 523, Mismatches: 88, Indels: 38
0.81 0.14 0.06
Matches are distributed among these distances:
632 29 0.06
634 44 0.08
635 262 0.50
636 12 0.02
637 66 0.13
638 51 0.10
639 4 0.01
640 53 0.10
641 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (634 bp):
CAATTTTTAGCTGAAATCGTGTACTAACCATCACGGTGTTTGGATAAAACGTTCCGGAGCCCCGA
CTCAATTTTGCATGATTTTTGACGCAAAGACTCCATGAAATATCTATATTCATCGAAGCAAATCT
TAGCCAAATTGGATATAAGGATTTGTTTTTACGAGCATATCAATCTTGTTTCGATTTAATTAGAA
ATTAATTCGAAAAAAATGGAAAAACGATACTAGAAGCGTAAAAAGCCCGTCAATCTTTTGGGCGT
TGAATTATATATTTTTTCTGAATATTGTAGCAAAAAATTGAGAAAAAACTTTAGGGTCAGTTTTT
AGCCGAAATCGTATACTCATCACAGTTTTGAACTAAAAACGCGCTTCCGAGGCCCCGGTCTATTT
TGCATGATCTTTGGCGCAAAAACTACTTGAAACATCTATATTCATCGAAGCAAATCTCAGCAATA
TTGGATATAAGGATTTGCTTTTACGAGCATCACAATCCTGTTTCGATTTAAACAGAAACTAATTC
AAAAAAAAATGGAAAAACGATATCAAAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGGTGAATTA
TAATTTTTATCAGTCTATTGTGCCCAAAAATTGAGAAAAAAATTCAGGC
Found at i:9705 original size:15 final size:15
Alignment explanation
Indices: 9685--9713 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9675 ATCTGTTGAA
9685 AATGCAACAAAATGT
1 AATGCAACAAAATGT
9700 AATGCAACAAAATG
1 AATGCAACAAAATG
9714 GGCCCATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.17
Consensus pattern (15 bp):
AATGCAACAAAATGT
Found at i:10387 original size:36 final size:36
Alignment explanation
Indices: 10340--10416 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
10330 AGAGATTAGA
*
10340 TCAAGAAATAAACGGCTTGTTCTAGCCTAGCAAGTC
1 TCAAGAAATAAACAGCTTGTTCTAGCCTAGCAAGTC
*
10376 TCAAGAAATAAACAGCTTGTTCTAGCTTAGCAAGTC
1 TCAAGAAATAAACAGCTTGTTCTAGCCTAGCAAGTC
10412 TCAAG
1 TCAAG
10417 TTCAAGACCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (36 bp):
TCAAGAAATAAACAGCTTGTTCTAGCCTAGCAAGTC
Found at i:11461 original size:7 final size:7
Alignment explanation
Indices: 11449--11477 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
11439 CCATTCATTC
11449 ACAAACA
1 ACAAACA
11456 ACAAACA
1 ACAAACA
11463 ACAAACA
1 ACAAACA
11470 ACAAACA
1 ACAAACA
11477 A
1 A
11478 TTTGGGGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00
Consensus pattern (7 bp):
ACAAACA
Found at i:12022 original size:53 final size:51
Alignment explanation
Indices: 11907--12083 Score: 309
Period size: 52 Copynumber: 3.4 Consensus size: 51
11897 TGTCACTATG
* *
11907 CTAATTGCTAAGTTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTC
1 CTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTC
11958 CTAATTACTAAATCTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTC
1 CTAATTACTAAAT-TTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTC
12010 CTTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCC
1 C-TAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCT-C
12063 CTAATTACTAAATTTTTTAAA
1 CTAATTACTAAATTTTTTAAA
12084 CTTTTTAAAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
51 11 0.09
52 96 0.79
53 14 0.12
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (51 bp):
CTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTC
Found at i:25321 original size:30 final size:30
Alignment explanation
Indices: 25285--25343 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
25275 TTAAATGAGC
25285 CATTAAAATTTGAGGGTATAAGAGAAAAGA
1 CATTAAAATTTGAGGGTATAAGAGAAAAGA
*
25315 CATTAAAATTTGAGGGTATAAGAGGAAAG
1 CATTAAAATTTGAGGGTATAAGAGAAAAG
25344 TCAAGATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.25, T:0.24
Consensus pattern (30 bp):
CATTAAAATTTGAGGGTATAAGAGAAAAGA
Found at i:26784 original size:35 final size:35
Alignment explanation
Indices: 26738--26818 Score: 153
Period size: 35 Copynumber: 2.3 Consensus size: 35
26728 AACATTTTTT
26738 TCTGTTTTGTCCCTAACCCCTTCGAACCATAGTTG
1 TCTGTTTTGTCCCTAACCCCTTCGAACCATAGTTG
*
26773 TCTGTTTTGTCCCTGACCCCTTCGAACCATAGTTG
1 TCTGTTTTGTCCCTAACCCCTTCGAACCATAGTTG
26808 TCTGTTTTGTC
1 TCTGTTTTGTC
26819 TGTGTCTATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.14, C:0.30, G:0.16, T:0.41
Consensus pattern (35 bp):
TCTGTTTTGTCCCTAACCCCTTCGAACCATAGTTG
Found at i:34644 original size:20 final size:18
Alignment explanation
Indices: 34621--34665 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
34611 CTTACCCCAC
34621 CTCCTTTTGTCTACTTTTTT
1 CTCCTTTTGTCT--TTTTTT
*
34641 CTCCTTTTTTCTTTTTTT
1 CTCCTTTTGTCTTTTTTT
*
34659 TTCCTTT
1 CTCCTTT
34666 CTTTTTGGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 12 0.52
20 11 0.48
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.71
Consensus pattern (18 bp):
CTCCTTTTGTCTTTTTTT
Found at i:43580 original size:31 final size:31
Alignment explanation
Indices: 43510--43584 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
43500 TACCGTACAT
*
43510 GTCCCTCTACTTACAAAAAGGGATCGATTTG
1 GTCCCTCTACTTACAAAAAGGGATCGAATTG
* *** *
43541 GTCTCTCTACTTACAATTTGGTATC-AATTG
1 GTCCCTCTACTTACAAAAAGGGATCGAATTG
43571 AGTCCCTCTACTTA
1 -GTCCCTCTACTTA
43585 ACAGAATCTG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (31 bp):
GTCCCTCTACTTACAAAAAGGGATCGAATTG
Found at i:43912 original size:30 final size:30
Alignment explanation
Indices: 43849--43918 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
43839 TGACACCAAA
* * * *
43849 TTGTAAATAGAGGGACCAAATTGACAGTTT
1 TTGTAAGTAGGGGGACCAAATTGACACTCT
*
43879 TTGT-AGTAGGGGGACCAAATTGATCCCTCT
1 TTGTAAGTAGGGGGACCAAATTGA-CACTCT
43909 TTGTAAGTAG
1 TTGTAAGTAG
43919 AAGGACCTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 17 0.52
30 11 0.33
31 5 0.15
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (30 bp):
TTGTAAGTAGGGGGACCAAATTGACACTCT
Found at i:54634 original size:23 final size:23
Alignment explanation
Indices: 54604--54650 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
54594 AATTGGTTTC
*
54604 GAGTTCATATGATTTTTTGAATG
1 GAGTTCATATGATTTTGTGAATG
*
54627 GAGTTCATTTGATTTTGTGAATG
1 GAGTTCATATGATTTTGTGAATG
54650 G
1 G
54651 GAAAATCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.23, C:0.04, G:0.26, T:0.47
Consensus pattern (23 bp):
GAGTTCATATGATTTTGTGAATG
Found at i:54776 original size:29 final size:30
Alignment explanation
Indices: 54732--54799 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
54722 GTAGTGTGTG
*
54732 GACATTTTATCCCATGAACTTCAATTTT-A
1 GACATTTTATCACATGAACTTCAATTTTGA
* * *
54761 GACATTTTGTCACATGAATTTCAATTTTGG
1 GACATTTTATCACATGAACTTCAATTTTGA
54791 GACATTTTA
1 GACATTTTA
54800 CCCCTTCAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 25 0.76
30 8 0.24
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (30 bp):
GACATTTTATCACATGAACTTCAATTTTGA
Done.