Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020839.1 Corchorus olitorius cultivar O-4 contig20872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48471

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1194--2519
332
4.0
333
84
3
1776
35
15
14
34
1.88
4610--4661
11
4.6
11
81
11
52
44
1
1
51
1.23
8229--8254
13
2.0
13
100
0
52
69
15
7
7
1.35
20932--20964
14
2.3
15
94
5
59
54
0
9
36
1.32
22290--22322
13
2.5
13
95
0
57
39
0
15
45
1.46
22567--22634
34
2.0
34
100
0
136
29
26
17
26
1.98
28534--28572
17
2.3
17
95
0
69
33
10
23
33
1.88
29632--29666
3
11.7
3
87
0
52
0
37
2
60
1.12
35989--36198
102
2.0
104
90
3
334
33
15
24
26
1.95
47430--47464
15
2.3
15
95
0
61
20
8
0
71
1.11

Tables:   1

The End!