Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002084.1 Corchorus olitorius cultivar O-4 contig02084, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1617
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37


Found at i:415 original size:20 final size:20

Alignment explanation


    Indices: 374--414  Score: 59
    Period size: 19  Copynumber: 2.1  Consensus size: 20

        364 ACTGAATTTA

                                
        374 TTGATAACATTCAAAAACTT
          1 TTGATAACATTCAAAAACTT

                                 
        394 TTGATAAC-TT-AAATAACTT
          1 TTGATAACATTCAAA-AACTT

              
        413 TT
          1 TT

        415 TAATGAATAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  18    3  0.15
  19    9  0.45
  20    8  0.40

ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41


Consensus pattern (20 bp):   
TTGATAACATTCAAAAACTT
Done.