Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020840.1 Corchorus olitorius cultivar O-4 contig20873, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6431
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:6338 original size:7 final size:7

Alignment explanation


    Indices: 6326--6429  Score: 187
    Period size: 7  Copynumber: 15.3  Consensus size: 7

       6316 AAAAGGAGGG

                   
       6326 AAACCCT
          1 AAACCCT

                   
       6333 AAACCCT
          1 AAACCCT

                   
       6340 AAACCCT
          1 AAACCCT

                   
       6347 AAACCCT
          1 AAACCCT

                   
       6354 -AACCCT
          1 AAACCCT

                   
       6360 -AACCCT
          1 AAACCCT

                   
       6366 AAACCCT
          1 AAACCCT

                   
       6373 AAACCCT
          1 AAACCCT

                   
       6380 AAACCCT
          1 AAACCCT

                   
       6387 AAACCCT
          1 AAACCCT

                   
       6394 AAACCCT
          1 AAACCCT

                   
       6401 AAACCCT
          1 AAACCCT

                   
       6408 AAACCCT
          1 AAACCCT

                   
       6415 AAACCCT
          1 AAACCCT

                   
       6422 -AACCCT
          1 AAACCCT

              
       6428 AA
          1 AA

       6430 TA


Statistics
Matches: 95,  Mismatches: 0, Indels: 4
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   18  0.19
   7   77  0.81

ACGTcount: A:0.42, C:0.43, G:0.00, T:0.14


Consensus pattern (7 bp):   
AAACCCT

Done.