Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020841.1 Corchorus olitorius cultivar O-4 contig20874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97036

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2103--2154
21
2.4
21
81
15
54
7
7
38
46
1.61
4259--4294
11
3.2
11
88
4
54
77
16
2
2
1.00
8555--8593
10
3.9
10
89
0
60
28
23
10
38
1.87
8555--8592
20
1.9
20
94
0
67
28
23
10
36
1.88
9193--9238
18
2.6
18
100
0
92
56
0
43
0
0.99
16592--16622
2
15.5
2
100
0
62
48
0
0
51
1.00
26872--26993
51
2.4
51
88
0
190
13
18
46
22
1.82
35954--36037
36
2.3
36
95
0
150
21
21
11
45
1.84
35990--36100
48
2.3
48
95
0
195
18
22
10
48
1.78
41068--41123
29
1.9
29
100
0
112
28
16
17
37
1.91
55588--55618
2
15.5
2
100
0
62
48
0
0
51
1.00
74713--74756
2
22.0
2
100
0
88
50
0
0
50
1.00
76608--76641
3
11.3
3
100
0
68
32
0
0
67
0.91
77308--77348
2
20.5
2
100
0
82
48
0
0
51
1.00
84091--84224
53
2.5
53
96
0
250
42
17
11
28
1.84
90783--90822
21
1.9
21
89
0
62
37
15
5
42
1.68
91722--91755
7
4.9
7
100
0
68
29
0
41
29
1.57
92692--92749
23
2.5
23
86
8
73
13
10
3
72
1.24
94220--94245
7
3.7
7
100
0
52
15
30
11
42
1.82

Tables:   1

The End!