Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020845.1 Corchorus olitorius cultivar O-4 contig20878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49767

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
487--796
156
2.0
156
93
2
534
32
15
12
39
1.84
645--1879
333
3.7
330
81
6
1453
33
17
14
34
1.90
1269--2510
631
2.0
621
84
5
1610
33
17
14
34
1.90
1912--2532
333
1.9
335
85
5
864
34
17
15
33
1.91
4792--4816
11
2.3
11
100
0
50
36
28
16
20
1.93
4874--4954
18
4.5
18
78
9
76
2
58
14
24
1.49
4886--4974
6
14.8
6
84
4
81
1
58
16
23
1.45
4886--4974
12
7.4
12
82
3
99
1
58
16
23
1.45
4886--4973
30
2.9
30
88
3
124
1
57
17
23
1.46
4886--4974
36
2.5
36
88
3
135
1
58
16
23
1.45
15362--15537
86
2.0
86
88
8
257
35
15
13
36
1.86
21674--21708
14
2.5
14
100
0
70
14
34
20
31
1.92
30358--30441
33
2.5
33
100
0
168
57
11
16
14
1.66
34545--34769
81
2.7
84
89
4
321
20
28
15
36
1.92
34506--34834
87
3.9
87
83
5
384
22
28
13
34
1.93
36828--36855
14
2.0
14
100
0
56
42
21
14
21
1.88
45336--45600
132
2.0
132
91
2
435
38
8
1
50
1.44

Tables:   1

The End!