Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020846.1 Corchorus olitorius cultivar O-4 contig20879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106714

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
416--465
26
1.9
26
87
0
73
38
8
20
34
1.82
585--641
27
2.2
26
81
9
62
54
5
8
31
1.53
10951--10985
18
1.9
18
88
0
52
14
28
0
57
1.38
25340--25396
30
1.9
29
86
10
80
17
8
26
47
1.77
25852--25888
18
2.1
18
100
0
74
37
16
5
40
1.71
37454--37518
21
3.2
21
64
24
57
49
9
15
26
1.74
45041--45144
52
2.0
52
100
0
208
44
17
15
23
1.86
46400--46457
25
2.3
25
79
5
64
37
8
37
15
1.78
53510--53542
14
2.3
15
89
5
50
39
12
21
27
1.88
53585--53611
13
2.1
13
100
0
54
33
22
22
22
1.97
55741--55773
2
16.5
2
100
0
66
48
0
0
51
1.00
68693--69238
211
2.6
210
80
4
607
35
25
22
16
1.94
72671--72753
43
1.9
43
82
4
105
37
13
24
25
1.91
80413--80446
17
2.1
17
88
5
52
52
2
0
44
1.16
81866--81937
27
2.7
27
100
0
144
41
26
13
18
1.87
96252--96298
13
3.5
13
85
11
60
85
12
2
0
0.70
96251--96298
7
7.0
7
88
9
64
85
12
2
0
0.69
97857--97994
68
2.0
69
88
1
206
18
31
23
27
1.97
101048--101095
20
2.3
21
89
3
71
66
6
8
18
1.39
105755--105814
29
2.0
31
87
6
88
35
8
18
38
1.81

Tables:   1

The End!