Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020848.1 Corchorus olitorius cultivar O-4 contig20881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23557
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:6261 original size:16 final size:16

Alignment explanation


    Indices: 6236--6268  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       6226 GTGGCCCCTT

                            
       6236 TTTATGTGTGGAATAC
          1 TTTATGTGTGGAATAC

                 *          
       6252 TTTATTTGTGGAATAC
          1 TTTATGTGTGGAATAC

             
       6268 T
          1 T

       6269 CATGTGTGTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.24, C:0.06, G:0.21, T:0.48


Consensus pattern (16 bp):   
TTTATGTGTGGAATAC

Found at i:6380 original size:21 final size:19

Alignment explanation


    Indices: 6355--6401  Score: 76
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       6345 ATATGTGAAC

                             * 
       6355 ATGTGTGTGGAATATTCGT
          1 ATGTGTGTGGAATATTCAT

                    *          
       6374 ATGTGTGTAGAATATTCAT
          1 ATGTGTGTGGAATATTCAT

                     
       6393 ATGTGTGTG
          1 ATGTGTGTG

       6402 TGAGGTGCAG


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.23, C:0.04, G:0.30, T:0.43


Consensus pattern (19 bp):   
ATGTGTGTGGAATATTCAT
Done.