genome.fa.s20852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020852.1 Corchorus olitorius cultivar O-4 contig20885, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  248770

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33951--33994	22	2.0	22	100	0	88	50	4	13	31	1.62
39735--39807	27	2.7	26	85	4	74	15	15	31	38	1.88
39812--39879	19	3.3	19	68	28	57	13	11	32	42	1.80
39962--40044	38	2.2	37	85	4	105	9	22	20	46	1.79
39993--40065	18	3.9	18	73	5	65	9	23	21	45	1.81
43150--43207	30	1.9	30	82	0	71	17	13	12	56	1.66
52318--52343	8	3.2	8	100	0	52	38	23	0	38	1.55
56264--56324	30	2.0	30	87	6	88	42	9	16	31	1.81
62380--62413	8	4.2	8	100	0	68	38	23	0	38	1.55
66437--66468	6	5.3	6	100	0	64	53	0	15	31	1.43
70830--70865	19	1.9	18	88	5	54	27	25	5	41	1.77
74193--74230	20	1.9	20	94	0	67	36	15	5	42	1.70
75212--75247	16	2.2	16	100	0	72	55	11	0	33	1.35
76336--76379	23	1.9	23	100	0	88	68	13	4	13	1.36
76937--77012	36	2.1	36	100	0	152	10	15	39	34	1.82
77009--77073	24	2.7	24	100	0	130	9	9	41	40	1.69
77080--77127	15	3.2	15	90	0	69	0	14	39	45	1.45
78068--78128	27	2.2	28	91	5	97	63	0	6	29	1.19
78163--78228	30	2.2	31	91	2	107	42	6	28	22	1.77
78739--78784	12	3.8	12	88	0	74	26	2	2	69	1.11
78739--78784	24	1.9	24	100	0	92	26	2	2	69	1.11
78948--78994	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79521--79581	24	2.5	24	92	5	97	14	62	1	21	1.41
79537--79581	12	3.8	12	93	0	81	17	62	0	20	1.33
80044--80121	38	2.1	38	100	0	156	39	8	28	23	1.84
98946--98984	20	2.0	20	84	0	51	35	7	12	43	1.72
102380--102405	3	8.7	3	100	0	52	0	30	0	69	0.89
104980--105010	1	31.0	1	100	0	62	0	0	0	100	0.00
106856--106933	41	1.9	41	89	5	122	43	11	14	30	1.80
116387--116418	4	8.0	4	100	0	64	25	0	0	75	0.81
116414--116447	3	11.3	3	100	0	68	32	0	0	67	0.91
128180--128206	2	13.5	2	100	0	54	51	0	0	48	1.00
132176--132209	15	2.2	16	89	5	52	70	2	23	2	1.15
135708--135805	49	2.0	49	89	0	151	46	11	11	30	1.74
136831--136862	1	32.0	1	93	0	55	96	3	0	0	0.20
166034--166074	21	2.0	21	90	0	64	29	7	7	56	1.54
184658--184706	25	2.0	25	84	8	64	46	6	0	46	1.27
192484--193178	356	2.0	356	98	0	1345	29	12	14	44	1.82
200593--200647	29	1.9	28	82	10	67	47	12	20	20	1.82
210085--210111	2	13.5	2	100	0	54	51	0	0	48	1.00
220833--220867	14	2.4	14	95	4	61	54	8	8	28	1.60
242488--242517	4	7.5	4	92	0	51	0	23	3	73	0.98
243761--243818	22	2.5	23	80	5	64	34	5	5	55	1.45
245124--248749	325	11.1	322	71	15	2321	32	15	16	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245079--248770	650	5.6	650	84	6	4518	32	15	16	35	1.90

Tables:   1

The End!