Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020853.1 Corchorus olitorius cultivar O-4 contig20886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30581

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115--3988
659
5.9
658
88
3
5528
32
15
16
35
1.90
4201--4231
13
2.5
13
94
5
55
70
0
0
29
0.87
5361--7450
325
6.4
324
74
12
1532
32
15
15
36
1.89
5325--7540
650
3.4
653
87
4
3106
32
15
15
36
1.89
11203--11233
3
10.3
3
92
0
53
38
0
0
61
0.96
22063--22126
30
2.1
30
100
0
128
40
17
12
29
1.86
22941--22976
2
18.0
2
100
0
72
0
0
50
50
1.00
25779--25828
15
3.3
15
88
0
73
20
38
0
42
1.52

Tables:   1

The End!