genome.fa.s20854.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020854.1 Corchorus olitorius cultivar O-4 contig20887, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  256735

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62--86	10	2.5	10	100	0	50	0	8	0	92	0.40
2704--2758	19	3.0	19	73	7	60	36	12	16	34	1.87
3071--3173	53	1.9	53	86	3	145	55	12	6	25	1.61
8335--8554	109	2.0	107	87	6	311	40	16	17	25	1.90
34382--34464	33	2.5	33	84	3	114	33	40	19	6	1.76
61693--61735	20	2.2	20	83	8	52	18	18	6	55	1.64
75855--75903	3	16.3	3	82	0	62	32	0	36	30	1.58
96543--96679	67	2.0	67	91	0	220	24	20	17	37	1.94
119123--119184	3	20.7	3	100	0	124	33	0	0	66	0.92
125803--125827	2	12.5	2	100	0	50	0	52	0	48	1.00
130198--130225	2	14.0	2	100	0	56	50	0	0	50	1.00
149811--149863	21	2.5	21	84	0	61	52	35	7	3	1.48
156568--156611	17	2.6	17	88	0	70	56	13	2	27	1.49
161386--161550	85	2.0	81	92	4	276	40	16	9	34	1.80
166235--166298	33	1.9	33	83	0	83	10	18	21	48	1.79
168240--168269	14	2.1	14	100	0	60	26	23	20	30	1.98
168889--170330	48	30.3	48	78	11	1289	40	17	14	27	1.89
168902--170323	47	29.9	46	75	12	877	39	18	14	27	1.89
168902--170322	95	14.9	93	76	12	1029	39	18	14	27	1.89
169158--169193	18	2.0	18	94	0	63	44	30	0	25	1.54
169019--169338	157	2.0	159	89	6	486	39	18	14	27	1.89
169068--169290	115	2.0	108	86	6	311	40	19	13	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169443--170334	47	18.7	49	83	6	1056	39	17	14	27	1.89
170315--170350	17	2.0	19	89	10	58	58	5	2	33	1.36
170265--170398	66	2.0	67	87	7	193	44	14	11	28	1.81
170682--171249	293	1.9	295	86	1	809	31	16	18	33	1.93
170976--172633	334	5.0	332	88	3	2392	31	16	17	34	1.92
172855--177579	334	14.3	333	85	6	6061	31	15	18	34	1.92
172669--178093	668	8.3	663	83	6	6395	31	15	17	34	1.92
178705--179978	333	3.8	332	85	3	1546	31	15	16	36	1.90
181221--181341	49	2.5	49	88	0	179	39	23	28	8	1.83
181360--181460	49	2.1	49	92	0	166	35	25	30	7	1.85
181233--181526	117	2.5	115	89	3	437	38	26	27	7	1.84
181405--181647	68	3.6	66	90	3	378	37	27	27	7	1.83
181388--181647	134	1.9	136	89	3	409	38	26	27	7	1.83
182270--182389	48	2.5	49	90	1	188	37	25	30	7	1.83
182335--182603	68	4.1	68	85	9	387	37	26	28	6	1.82
182397--182587	59	3.1	59	84	12	274	36	27	29	7	1.84
182335--182587	127	2.0	126	95	0	452	36	27	29	6	1.82
185248--185272	12	2.1	12	100	0	50	40	16	16	28	1.89
186955--187011	30	1.9	30	92	7	98	47	7	21	24	1.75
197141--197166	9	2.9	9	100	0	52	92	7	0	0	0.39
197140--197168	9	3.0	10	90	10	51	89	10	0	0	0.48
213772--213873	48	2.1	48	90	0	159	13	11	45	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213799--213873	24	3.1	24	70	0	78	12	10	48	29	1.74
213952--213993	18	2.4	18	77	18	52	16	0	61	21	1.34
221102--221138	14	2.6	14	95	0	65	13	10	13	62	1.55
221719--221752	2	17.0	2	100	0	68	50	0	0	50	1.00
224307--224339	6	5.5	6	96	0	57	57	15	27	0	1.38
225795--225829	16	2.2	16	100	0	70	22	11	0	65	1.24
237658--237693	1	36.0	1	88	0	54	94	0	2	2	0.37
249626--249657	16	2.0	16	93	0	55	53	12	15	18	1.73
252216--252240	3	8.3	3	100	0	50	36	0	32	32	1.58
253299--255333	334	6.1	334	86	4	2779	33	16	17	31	1.93
255202--255494	159	1.8	159	91	1	478	35	16	15	33	1.90
254877--255826	492	1.9	493	93	1	1636	33	16	16	32	1.92
255333--256114	332	2.3	331	86	2	1066	34	17	16	32	1.92
255937--256291	180	2.0	182	84	3	466	35	18	17	28	1.93

Tables:   1

The End!