Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020855.1 Corchorus olitorius cultivar O-4 contig20888, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162264

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2867
662
4.3
665
85
3
3690
33
16
17
33
1.92
1--2867
332
8.7
331
85
4
3653
33
16
17
33
1.92
23431--23460
2
15.0
2
100
0
60
50
0
0
50
1.00
24631--24688
29
2.0
29
93
0
98
22
17
25
34
1.96
28871--28957
34
2.5
35
90
5
140
47
17
6
28
1.73
31313--31338
3
8.7
3
100
0
52
69
0
30
0
0.89
34213--34312
13
7.2
13
71
18
76
18
13
8
61
1.55
34213--34312
28
3.5
28
85
6
139
18
13
8
61
1.55
42142--42168
2
13.5
2
100
0
54
51
0
0
48
1.00
44423--44452
13
2.2
13
94
5
51
0
13
0
86
0.57
52515--52560
24
1.9
24
82
8
58
19
6
28
45
1.75
65895--65924
12
2.4
13
94
5
53
73
0
16
10
1.09
68551--68788
120
2.0
119
92
2
397
29
17
14
38
1.89
83716--83799
41
2.0
41
97
0
159
40
10
27
21
1.86
89057--89097
3
13.7
3
100
0
82
0
34
0
65
0.93
94050--94228
89
2.0
90
97
1
342
29
14
11
44
1.80
100530--100562
7
4.9
7
88
7
50
51
0
3
45
1.16
103208--103243
17
2.1
18
94
5
65
52
16
0
30
1.44
103210--103244
9
4.0
9
85
7
54
54
20
0
25
1.45
103210--103244
13
2.7
13
81
0
52
54
20
0
25
1.45
107453--107487
18
1.9
18
94
0
61
80
0
20
0
0.72
138308--138368
2
31.0
2
76
15
56
42
8
0
49
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
139066--139099
16
2.1
16
100
0
68
44
5
5
44
1.52
149890--149942
16
3.3
16
74
10
54
49
33
11
5
1.62
150132--150256
32
3.9
32
76
9
112
38
35
8
17
1.81
150188--150234
16
2.9
17
68
12
53
38
34
6
21
1.79
150770--150805
6
6.0
6
96
0
63
0
19
0
80
0.71
152144--152181
19
2.0
20
85
15
53
23
5
21
50
1.69
156550--156961
36
12.4
36
80
14
419
31
25
14
27
1.95
156565--157068
27
16.4
27
71
23
201
30
25
15
27
1.96
156634--157041
63
6.6
63
78
10
455
31
25
15
27
1.96
156769--157068
54
5.2
54
79
14
275
31
24
16
28
1.96
157033--157139
35
3.0
35
81
6
126
33
24
11
30
1.90
157935--158019
44
2.0
43
88
2
125
30
15
17
36
1.91
157976--159769
26
69.7
26
82
4
1817
31
13
21
32
1.93
157978--160010
52
39.3
51
81
6
2036
30
14
21
33
1.93
157888--160010
78
27.5
75
79
7
2044
30
14
21
33
1.93
159775--160010
26
9.1
26
74
9
146
28
17
20
33
1.95
159704--159831
62
2.1
61
82
4
150
26
13
22
37
1.91
161007--162264
333
3.8
332
86
1
1788
31
15
16
35
1.91

Tables:   1

The End!