genome.fa.s20856.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020856.1 Corchorus olitorius cultivar O-4 contig20889, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198655

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--5763	333	17.6	331	81	6	5671	32	15	16	35	1.90
1--6409	998	6.6	991	79	8	5877	32	15	16	35	1.90
3418--3450	11	3.1	11	82	8	50	33	9	15	42	1.78
6738--7683	331	2.8	326	81	5	1056	32	15	16	35	1.90
8359--8390	16	2.0	16	100	0	64	25	18	18	37	1.94
9772--9868	40	2.4	40	91	0	149	23	34	23	18	1.96
9955--10105	40	3.8	40	85	3	223	27	37	20	14	1.92
15423--15452	14	2.1	14	93	0	51	50	13	0	36	1.42
25943--25991	24	2.0	24	92	0	80	22	14	24	38	1.91
28348--28419	29	2.4	30	83	4	92	26	29	15	29	1.96
28721--28793	29	2.4	31	86	4	105	34	10	26	28	1.90
37137--37187	24	2.1	24	100	0	102	17	11	17	52	1.73
37140--37195	24	2.4	23	91	5	87	14	12	19	53	1.72
45493--45529	17	2.2	17	100	0	74	51	27	5	16	1.66
53784--53826	7	6.1	7	88	0	68	13	23	32	30	1.93
53788--53826	14	2.8	14	100	0	78	12	23	33	30	1.92
54090--54115	6	4.3	6	100	0	52	15	46	38	0	1.46
61425--61453	13	2.2	13	100	0	58	44	10	20	24	1.82
71102--71174	38	1.9	38	100	0	146	53	15	10	20	1.71
81610--82084	168	2.8	168	97	0	896	32	14	26	26	1.94
92622--92761	72	1.9	72	90	5	221	35	26	11	26	1.90
103011--103059	3	16.3	3	86	0	62	40	0	59	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103011--103073	21	3.0	21	88	0	81	41	0	55	3	1.16
108774--108831	19	2.9	19	82	5	62	37	10	20	31	1.86
108882--108918	19	1.9	19	94	0	65	35	13	35	16	1.88
112644--112672	3	9.7	3	100	0	58	31	68	0	0	0.89
119470--119512	2	22.0	2	95	4	79	48	0	0	51	1.00
125292--125333	19	2.2	19	83	8	50	54	7	2	35	1.41
130143--130209	3	22.7	3	96	3	127	65	0	0	34	0.93
130292--130338	20	2.3	20	82	13	53	53	12	2	31	1.51
137227--137272	23	2.0	23	100	0	92	34	17	8	39	1.80
137729--137768	2	20.0	2	100	0	80	50	0	0	50	1.00
155147--155319	58	3.0	55	85	6	220	38	10	13	38	1.79
159560--159608	15	3.3	15	82	0	71	18	30	44	6	1.74
162436--162470	1	35.0	1	94	0	61	0	2	0	97	0.19
166276--166341	31	2.1	32	86	5	91	24	21	7	46	1.76
167969--168008	21	1.9	21	94	0	71	22	25	52	0	1.47
169721--169935	53	4.1	53	96	0	378	50	18	7	22	1.72
170592--170696	55	1.9	55	98	0	201	18	3	26	51	1.63
170715--170817	50	2.0	51	92	1	172	29	5	20	44	1.74
174451--174482	15	2.1	15	100	0	64	43	12	9	34	1.75
180103--180506	77	5.4	71	81	12	370	37	13	16	32	1.88
180373--180654	81	3.5	84	75	16	217	40	10	15	32	1.82
180546--180697	81	1.9	77	85	7	207	39	12	15	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187481--187552	36	2.0	36	94	0	126	34	13	13	37	1.85
187555--187584	5	6.0	5	100	0	60	60	0	0	40	0.97
188603--188647	2	22.0	2	90	4	72	51	0	2	46	1.13
189024--189283	132	2.0	132	91	0	421	34	16	12	36	1.86
189149--191398	333	6.8	334	85	2	2996	35	15	15	33	1.89
189149--191401	997	2.3	995	86	2	3092	35	15	15	33	1.89
189156--191398	664	3.4	663	87	2	3411	35	15	15	33	1.89
193779--194586	332	2.4	325	81	5	876	37	15	12	34	1.86
194491--195041	231	2.4	231	92	3	882	37	15	9	37	1.79
195717--195742	10	2.6	10	100	0	52	65	0	11	23	1.25
194825--198653	332	11.6	331	80	6	3442	35	15	14	34	1.88

Tables:   1

The End!