Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020858.1 Corchorus olitorius cultivar O-4 contig20891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6643
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:6 original size:1 final size:1

Alignment explanation


    Indices: 1--26  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

                                      
          1 AAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAA

         27 GAGGAAGAAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:6632 original size:1 final size:1

Alignment explanation


    Indices: 6591--6621  Score: 62
    Period size: 1  Copynumber: 31.0  Consensus size: 1

       6581 AATGCAAGTG

                                           
       6591 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

       6622 CTTTTTAAAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   30  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A
Done.