Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020859.1 Corchorus olitorius cultivar O-4 contig20892, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29383

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
830--869
18
2.3
16
87
12
53
72
7
12
7
1.27
2124--2227
31
3.4
30
77
15
106
39
7
20
32
1.81
2170--2228
29
2.0
30
83
9
77
37
8
18
35
1.81
3251--3284
15
2.4
14
85
5
50
50
14
0
35
1.44
8728--8765
20
1.9
20
88
0
58
34
2
13
50
1.55
26233--26367
67
2.0
67
100
0
270
26
13
13
46
1.80
28179--28208
2
15.0
2
100
0
60
50
0
0
50
1.00
29044--29088
21
2.4
19
85
14
58
8
17
26
46
1.78
29061--29143
42
2.0
43
85
7
116
22
18
22
36
1.95

Tables:   1

The End!