Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002086.1 Corchorus olitorius cultivar O-4 contig02086, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35


Found at i:861 original size:82 final size:82

Alignment explanation


    Indices: 767--925  Score: 284
    Period size: 82  Copynumber: 1.9  Consensus size: 82

        757 TATAGGTATC

                                 *                                           
        767 ATAAAAGGAAATTGTTGTGATTATATCATTTATGCTAATTGATTTTGATTTACAATATT-AAAAT
          1 ATAAAAGGAAATTGTTGTGATAATATCATTTATGCTAATTGATTTTGATTTACAATATTCAAAA-

                              
        831 CAAATCAAATCGGTAGAT
         65 CAAATCAAATCGGTAGAT

                                                                             
        849 ATAAAAGGAAATTGTTGTGATAATATCATTTATGCTAATTGATTTTGATTTACAATATTCAAAAC
          1 ATAAAAGGAAATTGTTGTGATAATATCATTTATGCTAATTGATTTTGATTTACAATATTCAAAAC

                *       
        914 AAATTAAATCGG
         66 AAATCAAATCGG

        926 AATATTTGAG


Statistics
Matches: 74,  Mismatches: 2, Indels: 2
        0.95            0.03        0.03

Matches are distributed among these distances:
  82   70  0.95
  83    4  0.05

ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38


Consensus pattern (82 bp):   
ATAAAAGGAAATTGTTGTGATAATATCATTTATGCTAATTGATTTTGATTTACAATATTCAAAAC
AAATCAAATCGGTAGAT
Done.