Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020862.1 Corchorus olitorius cultivar O-4 contig20895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75097

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1430
331
4.4
330
87
3
1986
36
17
14
32
1.90
1432--1634
26
7.9
26
84
3
250
33
22
16
27
1.95
1432--2803
52
26.8
50
79
10
1320
33
22
15
28
1.94
1619--1651
17
1.9
17
100
0
66
30
33
12
24
1.91
1636--2803
26
45.4
26
84
3
1200
33
22
15
29
1.94
2327--2364
19
2.0
19
90
10
60
31
31
10
26
1.90
2301--2390
45
2.0
45
91
0
144
34
26
12
26
1.92
3957--4072
20
5.6
20
71
9
88
30
25
6
37
1.80
4098--4218
24
5.4
24
63
15
87
29
25
8
36
1.85
3953--4332
44
9.0
42
91
3
500
28
27
7
36
1.83
4122--4320
20
9.4
20
63
10
83
28
29
6
35
1.82
4395--4623
121
1.9
121
93
1
397
43
21
20
14
1.87
10840--12376
780
2.0
778
98
0
2975
24
24
16
35
1.95
13433--13466
2
17.0
2
100
0
68
50
0
0
50
1.00
18960--19030
29
2.5
28
86
9
90
19
12
29
38
1.89
19505--19669
60
2.8
60
83
1
215
35
17
18
28
1.93
19565--19666
31
3.4
31
64
20
88
37
20
16
25
1.93
19709--19848
59
2.4
59
86
3
192
25
17
20
37
1.94
22439--22655
72
3.0
72
93
0
364
34
18
6
39
1.78
45627--45659
6
5.5
6
92
0
57
66
30
3
0
1.06
50880--51052
54
3.4
49
71
12
152
24
31
28
15
1.96
50876--51126
103
2.4
104
89
2
380
23
31
28
15
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51270--51877
104
5.9
102
81
7
681
24
28
28
17
1.97
51280--51877
208
2.9
205
85
4
767
24
28
28
17
1.98
54737--54800
10
6.4
10
90
0
101
48
39
1
10
1.48
57614--57714
10
10.1
10
89
0
130
47
36
1
13
1.55
60379--60413
11
3.2
11
100
0
70
45
8
0
45
1.34
61285--61331
21
2.2
21
88
11
69
14
0
21
63
1.30
62290--62343
10
5.4
10
93
0
90
51
37
0
11
1.37
68267--68296
15
2.0
15
100
0
60
13
0
40
46
1.43
70874--70918
11
4.0
11
82
5
63
0
11
11
77
0.99
70874--70918
23
2.0
22
86
4
63
0
11
11
77
0.99
74925--74975
26
2.0
26
85
11
70
49
1
7
41
1.43

Tables:   1

The End!