genome.fa.s20863.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020863.1 Corchorus olitorius cultivar O-4 contig20896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167105

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789--849	32	1.9	32	93	0	104	47	6	19	26	1.74
1801--1851	22	2.4	22	86	3	77	41	31	5	21	1.77
7240--7404	88	1.9	90	91	5	273	49	6	3	40	1.47
14050--14304	128	2.0	129	95	2	460	31	15	12	40	1.85
15549--15584	18	2.0	18	94	0	63	33	5	13	47	1.67
15566--15654	44	2.0	43	93	2	151	33	4	10	51	1.56
16370--18459	323	6.1	321	70	14	1249	34	17	14	33	1.90
18472--19277	330	2.4	329	83	6	966	34	17	15	32	1.91
24119--24175	22	2.6	22	91	0	87	29	19	22	28	1.98
26252--26296	19	2.4	19	100	0	90	8	0	11	80	0.92
26241--26305	19	3.4	19	89	0	85	10	0	9	80	0.92
26381--26412	13	2.4	13	94	5	55	31	0	6	62	1.20
36905--37160	42	6.1	41	84	4	314	38	12	30	18	1.88
36930--37160	84	2.7	84	93	0	390	40	12	29	17	1.87
36916--37158	126	1.9	126	88	1	362	39	13	28	18	1.88
40061--40093	2	16.5	2	100	0	66	48	0	0	51	1.00
40879--40966	24	3.7	24	90	0	140	51	2	37	9	1.46
40879--40976	48	2.0	49	90	2	153	51	3	36	9	1.50
47327--47358	15	2.1	15	94	0	55	15	37	6	40	1.73
51813--51896	41	2.0	41	97	0	159	23	5	21	48	1.72
55391--55474	42	2.0	42	88	4	125	20	26	15	38	1.92
58627--58744	60	2.0	60	89	0	182	26	22	4	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59101--59151	14	3.6	14	86	0	75	88	0	11	0	0.52
59103--59151	1	49.0	1	79	0	53	89	0	10	0	0.48
75950--75995	23	2.0	23	91	0	74	26	10	19	43	1.84
79880--79912	2	16.5	2	93	0	57	48	3	0	48	1.17
82756--82782	11	2.5	11	100	0	54	44	25	11	18	1.83
83249--83273	13	1.9	13	100	0	50	64	8	12	16	1.49
84335--84392	30	1.9	30	96	0	107	32	6	25	34	1.83
102328--102368	18	2.3	18	82	0	55	43	34	21	0	1.53
113511--113670	60	2.7	59	82	2	212	39	16	16	27	1.90
117941--117996	19	2.9	19	92	7	87	33	0	16	50	1.45
125157--125385	121	1.9	121	93	1	397	14	20	21	43	1.87
125460--125658	20	9.4	20	65	10	92	35	6	29	29	1.81
125448--125826	44	8.9	42	92	3	523	36	6	27	28	1.83
125562--125682	24	5.4	24	65	15	96	36	7	25	30	1.84
125708--125823	20	5.6	20	71	9	88	37	6	25	30	1.80
127168--127224	26	2.2	26	80	0	60	38	19	15	26	1.92
127998--128053	26	2.2	25	84	9	78	41	16	14	28	1.87
129108--129219	56	2.0	56	85	0	152	37	20	19	22	1.94
129217--129438	32	7.3	31	81	8	199	43	15	15	26	1.86
129232--129341	27	3.9	27	79	9	103	44	17	13	24	1.85
135718--135757	4	10.5	4	89	10	66	0	0	22	77	0.77
135725--135768	10	4.3	10	91	8	63	0	0	18	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135718--135774	8	7.2	8	84	9	55	0	0	17	82	0.67
135725--135775	10	5.0	10	88	7	59	0	0	15	84	0.63
135885--135922	18	2.1	18	100	0	76	21	15	23	39	1.92
141197--141266	31	2.3	31	100	0	140	42	30	10	17	1.81
142013--142049	19	1.9	19	88	0	56	16	27	13	43	1.85

Tables:   1

The End!