Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020864.1 Corchorus olitorius cultivar O-4 contig20897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95708

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
338--388
26
2.0
24
88
7
75
43
0
3
52
1.19
3404--3449
18
2.6
18
86
10
67
47
26
8
17
1.76
5081--5239
60
2.6
59
81
7
185
35
19
16
27
1.94
5283--5390
31
3.5
31
72
14
107
27
18
20
33
1.96
50364--50390
1
27.0
1
100
0
54
100
0
0
0
0.00
87357--87570
71
3.0
71
92
3
376
13
21
8
56
1.64
90304--90390
45
1.9
45
80
0
102
22
28
17
31
1.97
91245--91427
99
1.8
99
97
0
348
3
38
19
37
1.70
91335--91996
62
11.4
62
83
11
836
3
40
21
35
1.70
91465--91532
22
3.2
22
62
19
54
2
39
14
42
1.61
91400--91945
103
4.9
104
87
11
648
3
39
21
35
1.70
91568--91635
22
3.2
22
62
19
54
2
39
14
42
1.61
91335--91996
186
3.8
185
83
13
929
3
40
21
35
1.70
91977--92007
14
2.2
14
100
0
62
0
41
6
51
1.27
93046--93121
37
2.1
37
100
0
152
34
10
7
47
1.67
93647--94780
325
3.6
321
82
5
1291
33
14
16
34
1.90
94943--95598
314
2.1
318
84
6
853
32
14
17
34
1.91
94107--95708
818
1.9
818
95
2
2859
32
14
18
33
1.91

Tables:   1

The End!