Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020865.1 Corchorus olitorius cultivar O-4 contig20898, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80501

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
563--1241
325
2.1
325
86
2
954
32
15
17
34
1.91
61--1745
828
2.0
828
91
0
2746
32
15
17
34
1.91
889--2236
491
2.7
503
91
2
2123
32
15
17
34
1.91
1942--2559
324
1.9
323
87
1
907
31
16
17
34
1.92
1392--3113
826
2.1
815
93
2
2959
32
15
17
34
1.92
3537--5781
650
3.5
644
81
7
2549
35
17
14
32
1.90
3537--5769
327
6.9
323
81
7
2216
35
17
14
32
1.90
7667--7705
18
2.2
18
90
0
60
25
0
25
48
1.51
23818--23867
16
3.1
16
74
23
50
0
12
16
72
1.13
36304--36339
17
2.1
18
89
5
56
44
25
2
27
1.68
41543--41572
3
10.0
3
100
0
60
0
0
33
66
0.92
44220--44254
18
1.9
18
88
0
52
17
0
2
80
0.84
46294--46336
21
2.0
21
95
0
77
32
32
6
27
1.84
48978--49045
33
2.1
33
100
0
136
45
2
11
39
1.56
55349--55503
78
2.0
78
93
0
265
32
29
20
17
1.95
57189--57217
2
14.5
2
100
0
58
0
48
0
51
1.00
70068--70101
16
2.1
16
94
0
59
23
5
8
61
1.47
70027--70146
59
2.0
60
88
9
181
29
15
6
48
1.71
72901--72934
12
2.8
12
95
0
59
35
47
0
17
1.48
74843--74925
38
2.2
38
93
0
139
16
24
7
51
1.69
76926--77006
31
2.6
33
76
9
98
32
27
24
16
1.96

Tables:   1

The End!