Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020866.1 Corchorus olitorius cultivar O-4 contig20899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103437
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:9 original size:2 final size:2
Alignment explanation
Indices: 3--30 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1 TG
3 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31 CAATCTAGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8034 original size:72 final size:72
Alignment explanation
Indices: 7820--8037 Score: 348
Period size: 72 Copynumber: 3.0 Consensus size: 72
7810 TAGCACCTCA
* **
7820 TCAT-CAGAAGCTTGGACTAAGTTTCCTTTGTGGGAAGGTAATTGGCTTGGTAGCTTCTCGTCAT
1 TCATGCAGAAGCTTGGACTAAGGTTCCTTTGTGGGAAGGTAATTGGCTTGGTAGCACCTCGTCAT
*
7884 CCAATAA
66 CCAATAG
* *
7891 TGATGCAGAAGCTTGGAGTAAGGTTCCTTTGTGGGAAGGTAATTGGCTTGGTAGCACCTCGTCAT
1 TCATGCAGAAGCTTGGACTAAGGTTCCTTTGTGGGAAGGTAATTGGCTTGGTAGCACCTCGTCAT
7956 CCAATAG
66 CCAATAG
* * *
7963 TCATGCAGAAGCTTGGACTGAGGTTCCTTTGTTGGAAGGTAATTGGCTTGGTAACACCTCGTCAT
1 TCATGCAGAAGCTTGGACTAAGGTTCCTTTGTGGGAAGGTAATTGGCTTGGTAGCACCTCGTCAT
8028 CCAATAG
66 CCAATAG
8035 TCA
1 TCA
8038 ACAATACCGT
Statistics
Matches: 135, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 3 0.02
72 132 0.98
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (72 bp):
TCATGCAGAAGCTTGGACTAAGGTTCCTTTGTGGGAAGGTAATTGGCTTGGTAGCACCTCGTCAT
CCAATAG
Found at i:12539 original size:2 final size:2
Alignment explanation
Indices: 12532--12573 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
12522 CACATCATCC
*
12532 AT AT AT AT AT AT AT AT AT AT AT AT A- AA AT AT A- AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12571 AT A
1 AT A
12574 ATGTCTCCAC
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:13902 original size:2 final size:2
Alignment explanation
Indices: 13895--13921 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13885 GTAGTGGAGA
13895 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
13922 ATTCATTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14687 original size:22 final size:23
Alignment explanation
Indices: 14646--14703 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 23
14636 TTATTGAATA
14646 ATATAAAACATAT--TCTCCAAAT
1 ATATAAAA-ATATAATCTCCAAAT
14668 ATATAAAAATATAATC-CCAAAT
1 ATATAAAAATATAATCTCCAAAT
* *
14690 -TAGAATAATATAAT
1 ATATAAAAATATAAT
14704 TTTTTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 16 0.50
22 14 0.44
23 2 0.06
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (23 bp):
ATATAAAAATATAATCTCCAAAT
Found at i:16530 original size:24 final size:24
Alignment explanation
Indices: 16503--16551 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
16493 AGATGGATGA
16503 TATCA-CATTGGGACTAATATTTGG
1 TATCATCATT-GGACTAATATTTGG
* *
16527 TATCATCATTGGACTAGTTTTTGG
1 TATCATCATTGGACTAATATTTGG
16551 T
1 T
16552 GTTGTTGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.43
Consensus pattern (24 bp):
TATCATCATTGGACTAATATTTGG
Found at i:20816 original size:13 final size:13
Alignment explanation
Indices: 20798--20822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20788 GTGGTCAAAC
20798 TCAGTTTTCTTTA
1 TCAGTTTTCTTTA
20811 TCAGTTTTCTTT
1 TCAGTTTTCTTT
20823 TATATCTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.08, T:0.64
Consensus pattern (13 bp):
TCAGTTTTCTTTA
Found at i:21372 original size:68 final size:68
Alignment explanation
Indices: 21244--21385 Score: 221
Period size: 68 Copynumber: 2.1 Consensus size: 68
21234 GCCATAAAAT
* * *
21244 AATAGCCACTAAAGTGTTCATGGTAACTTTACGTCTAATTCACAACCCACCAGACATAGCACAAC
1 AATAGCCACTAAAATGTTCATAGTAACTTTACGTCTAATTCACAAACCACCAGACATAGCACAAC
21309 ACA
66 ACA
* * * *
21312 AATAGCCACTAAAATGTTCATAGTAACTTTACTTCTAATTTACAAACCACGAGACCTAGCACAAC
1 AATAGCCACTAAAATGTTCATAGTAACTTTACGTCTAATTCACAAACCACCAGACATAGCACAAC
21377 ACA
66 ACA
21380 AATAGC
1 AATAGC
21386 GCATTTAACA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (68 bp):
AATAGCCACTAAAATGTTCATAGTAACTTTACGTCTAATTCACAAACCACCAGACATAGCACAAC
ACA
Found at i:24412 original size:15 final size:16
Alignment explanation
Indices: 24392--24422 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
24382 TATGGGTGAT
24392 GGAGGAAT-ATGGAAA
1 GGAGGAATCATGGAAA
24407 GGAGGAATCATGGAAA
1 GGAGGAATCATGGAAA
24423 ATTTTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.45, C:0.03, G:0.39, T:0.13
Consensus pattern (16 bp):
GGAGGAATCATGGAAA
Found at i:28093 original size:57 final size:57
Alignment explanation
Indices: 27971--28135 Score: 273
Period size: 56 Copynumber: 2.9 Consensus size: 57
27961 TATCCGTTTC
*
27971 CTTTCACACAATAAATATTATAATAAATCAT--ATCCCCCTATCTCTACTTAATTATT
1 CTTTCACACAATAAATATTATAATAAATCATACAT-CCCCTATCTTTACTTAATTATT
*
28027 CTTTCACACAATAAATATTATAATAAATCATACATCCCCTATTTTTACTTAATTATT
1 CTTTCACACAATAAATATTATAATAAATCATACATCCCCTATCTTTACTTAATTATT
*
28084 CTTTCACACAATAAA-ATTATAATAAATCATACTTCCCCTATCTTTACTTAAT
1 CTTTCACACAATAAATATTATAATAAATCATACATCCCCTATCTTTACTTAAT
28136 ATTTACTTAA
Statistics
Matches: 103, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
56 66 0.64
57 35 0.34
58 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.40
Consensus pattern (57 bp):
CTTTCACACAATAAATATTATAATAAATCATACATCCCCTATCTTTACTTAATTATT
Found at i:29669 original size:42 final size:42
Alignment explanation
Indices: 29622--29702 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
29612 TAAGAATCAG
29622 GATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTCTAT
1 GATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTCTAT
*
29664 GATTTGAGTTGAGTATTTCTTAATTTACAGAGAATTTTC
1 GATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTC
29703 AAGACTTAGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (42 bp):
GATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTCTAT
Found at i:48704 original size:15 final size:15
Alignment explanation
Indices: 48684--48713 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
48674 GTTCATGAAT
48684 CGTCATTTAGAAAAA
1 CGTCATTTAGAAAAA
48699 CGTCATTTAGAAAAA
1 CGTCATTTAGAAAAA
48714 GTCTGCTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (15 bp):
CGTCATTTAGAAAAA
Found at i:50806 original size:39 final size:39
Alignment explanation
Indices: 50742--50818 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
50732 ATTTTTTCTT
50742 TGAATTATTCAAAGAATAAAGTCAACAATTATTTATGGC
1 TGAATTATTCAAAGAATAAAGTCAACAATTATTTATGGC
* *
50781 TGAATTATTCAAAGAGTAAATTCAACAATTATTTATGG
1 TGAATTATTCAAAGAATAAAGTCAACAATTATTTATGG
50819 GCGATTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (39 bp):
TGAATTATTCAAAGAATAAAGTCAACAATTATTTATGGC
Found at i:53823 original size:89 final size:89
Alignment explanation
Indices: 53672--53849 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
53662 GTTTATTCTA
53672 ATTGTTGTTAATTTTGATCATTAATTACATCAAATATATCAAATATATAATATTTTAACTTGAAC
1 ATTGTTGTTAATTTTGATCATTAATTACATCAAATATATCAAATATATAATATTTTAACTTGAAC
53737 AATTTGTTGTATGTTAAAAAGCAG
66 AATTTGTTGTATGTTAAAAAGCAG
53761 ATTGTTGTTAATTTTGATCATTAATTACATCAAATATATCAAATATATAATATTTTAACTTGAAC
1 ATTGTTGTTAATTTTGATCATTAATTACATCAAATATATCAAATATATAATATTTTAACTTGAAC
53826 AATTTGTTGTATGTTAAAAAGCAG
66 AATTTGTTGTATGTTAAAAAGCAG
53850 GTGCTAGGAG
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (89 bp):
ATTGTTGTTAATTTTGATCATTAATTACATCAAATATATCAAATATATAATATTTTAACTTGAAC
AATTTGTTGTATGTTAAAAAGCAG
Found at i:75707 original size:2 final size:2
Alignment explanation
Indices: 75700--75732 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
75690 CCAAAATTAC
75700 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75733 AGCTGGCAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78254 original size:22 final size:22
Alignment explanation
Indices: 78224--78272 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
78214 CATTAGCGTT
*
78224 TTTTTAGTATATAGCATTTCAG
1 TTTTCAGTATATAGCATTTCAG
*
78246 TTTTCAGTATATAGCATTTTAG
1 TTTTCAGTATATAGCATTTCAG
78268 TTTTC
1 TTTTC
78273 TTGTAAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.53
Consensus pattern (22 bp):
TTTTCAGTATATAGCATTTCAG
Found at i:78626 original size:30 final size:30
Alignment explanation
Indices: 78591--78653 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
78581 ACATTAAAGC
* *
78591 CCTCAAACATTTAT-TTTTATGCAATTTAAT
1 CCTCAAAC-TTTATATTTTATACAATTAAAT
* *
78621 CCTCAAGCTTTTTATTTTATACAATTAAAT
1 CCTCAAACTTTATATTTTATACAATTAAAT
78651 CCT
1 CCT
78654 TTAATTTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.32, C:0.19, G:0.03, T:0.46
Consensus pattern (30 bp):
CCTCAAACTTTATATTTTATACAATTAAAT
Found at i:83142 original size:24 final size:24
Alignment explanation
Indices: 83115--83169 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
83105 TCGAAGATGG
*
83115 TGGAGATGGTGACAGG-GATGGTCT
1 TGGAGATGGTGAC-GGAGATGGTAT
83139 TGGAGATGGTGACGGAGATGGTAT
1 TGGAGATGGTGACGGAGATGGTAT
83163 TGGAGAT
1 TGGAGAT
83170 ATTGGCGGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 2 0.07
24 27 0.93
ACGTcount: A:0.24, C:0.05, G:0.45, T:0.25
Consensus pattern (24 bp):
TGGAGATGGTGACGGAGATGGTAT
Found at i:83182 original size:24 final size:24
Alignment explanation
Indices: 83115--83185 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 24
83105 TCGAAGATGG
* *
83115 TGGAGATGGTGACAGG-GATGGTCT
1 TGGAGATAGTGAC-GGAGATGGTAT
*
83139 TGGAGATGGTGACGGAGATGGTAT
1 TGGAGATAGTGACGGAGATGGTAT
* * *
83163 TGGAGATATTGGCGGCGATGGTA
1 TGGAGATAGTGACGGAGATGGTA
83186 GAGGAACCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
23 2 0.05
24 39 0.95
ACGTcount: A:0.23, C:0.07, G:0.45, T:0.25
Consensus pattern (24 bp):
TGGAGATAGTGACGGAGATGGTAT
Found at i:84752 original size:9 final size:10
Alignment explanation
Indices: 84734--84825 Score: 106
Period size: 9 Copynumber: 9.5 Consensus size: 10
84724 TTCCAATTGC
84734 TTTG-CTCTG
1 TTTGTCTCTG
84743 TTTGTC-CTG
1 TTTGTCTCTG
84752 TTTGCTCTCTG
1 TTTG-TCTCTG
*
84763 TTTTTCTCTG
1 TTTGTCTCTG
84773 TTTGTC-CTG
1 TTTGTCTCTG
84782 TTTGTTCTCTG
1 TTTG-TCTCTG
84793 TTTGTTCTCTG
1 TTTG-TCTCTG
84804 -TT-TCTCTG
1 TTTGTCTCTG
84812 TTTGTC-CTG
1 TTTGTCTCTG
84821 TTTGT
1 TTTGT
84826 TCTCAGTCCA
Statistics
Matches: 74, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
8 6 0.08
9 28 0.38
10 20 0.27
11 20 0.27
ACGTcount: A:0.00, C:0.21, G:0.18, T:0.61
Consensus pattern (10 bp):
TTTGTCTCTG
Found at i:84774 original size:30 final size:30
Alignment explanation
Indices: 84738--84829 Score: 136
Period size: 30 Copynumber: 3.1 Consensus size: 30
84728 AATTGCTTTG
84738 CTCTGTTTGTCCTGTTTGCTCTCTGTTT-TT
1 CTCTGTTTGTCCTGTTTG-TCTCTGTTTGTT
84768 CTCTGTTTGTCCTGTTTGTTCTCTGTTTGTT
1 CTCTGTTTGTCCTGTTTG-TCTCTGTTTGTT
*
84799 CTCTGTTTCT-CTGTTTGTC-CTGTTTGTT
1 CTCTGTTTGTCCTGTTTGTCTCTGTTTGTT
84827 CTC
1 CTC
84830 AGTCCAATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.20
29 2 0.03
30 34 0.58
31 11 0.19
ACGTcount: A:0.00, C:0.23, G:0.17, T:0.60
Consensus pattern (30 bp):
CTCTGTTTGTCCTGTTTGTCTCTGTTTGTT
Found at i:84808 original size:39 final size:40
Alignment explanation
Indices: 84740--84829 Score: 141
Period size: 39 Copynumber: 2.3 Consensus size: 40
84730 TTGCTTTGCT
84740 CTGTTTG-TC-CTGTTTGCTCTCTGTTTTTCTCTGTTTGTC
1 CTGTTTGTTCTCTGTTTGCTCTCTG-TTTTCTCTGTTTGTC
*
84779 CTGTTTGTTCTCTGTTTGTTCTCTG-TTTCTCTGTTTGTC
1 CTGTTTGTTCTCTGTTTGCTCTCTGTTTTCTCTGTTTGTC
84818 CTGTTTGTTCTC
1 CTGTTTGTTCTC
84830 AGTCCAATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
39 33 0.69
40 2 0.04
41 13 0.27
ACGTcount: A:0.00, C:0.22, G:0.18, T:0.60
Consensus pattern (40 bp):
CTGTTTGTTCTCTGTTTGCTCTCTGTTTTCTCTGTTTGTC
Found at i:85053 original size:17 final size:16
Alignment explanation
Indices: 85014--85055 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
85004 GGTTGGTAGG
85014 ACGAAAAATTATCGTC
1 ACGAAAAATTATCGTC
85030 ACGAAAAATTATCGTC
1 ACGAAAAATTATCGTC
85046 ACGAAAAATT
1 ACGAAAAATT
85056 CTGTGTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.24
Consensus pattern (16 bp):
ACGAAAAATTATCGTC
Found at i:94924 original size:23 final size:23
Alignment explanation
Indices: 94880--94924 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
94870 TGTTGGGTTA
** *
94880 GTTGAGTTTTTTTGAGTCAGTTT
1 GTTGAGTTTTAGTCAGTCAGTTT
*
94903 GTTGAGTTTTAGTCAGTTAGTT
1 GTTGAGTTTTAGTCAGTCAGTT
94925 AGTCACACAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.16, C:0.04, G:0.27, T:0.53
Consensus pattern (23 bp):
GTTGAGTTTTAGTCAGTCAGTTT
Found at i:96980 original size:324 final size:322
Alignment explanation
Indices: 96050--97029 Score: 1035
Period size: 334 Copynumber: 3.0 Consensus size: 322
96040 AGTTTTCTGT
* * * * * ** *
96050 CAAATATCATGCAAAACTG-GTGCGGATCCCCGAAACGCGTTTTCAGCCCAAAAACAATGACGGT
1 CAAAAATCATCCAAAACTGAG-CCGGGTCCCCGAAACGCGTTTTTAGCCCAAAAACCGTGATGGT
* * * * ** * * *
96114 TAATACATGATTTCGGCTAAAAACTAACCCG-ATTTTTTTTTTCTGAATATTCCGCTACAATACT
65 TAGTACACGATTTCTGCTAAAAACTGACCCGAAAATTTTTTTCCTGAATTTTCCGCCACAATACT
* *
96178 CAGAAAAAATAAATAATTCAACATCAAAAAAATTGACAGGCTTTTCA-TGCTTCTAATATCG-TT
130 CAGAAAAAATATATAATTC-ACACCAAAAAAATTGAC-GGCTTTTCACT-CTTCTAATATCGTTT
* * *
96241 TTCCATTGTTTTTCGGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACT
192 TTCCATT-TTTTTCCGAATTAATTTCTAATTAAATCGAAAGAAGATTCAGATGCTCGTAAAAACA
* * * * * * * *
96306 AATCGTTACATCGAATTTGGCTGGGTTTTGGTTCGATGAATATAGGTATTTCAAGGAGTCTTTAT
256 AATCCTTAAATCCAATGTGGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTAT
96371 GC
321 GC
* * * * ** *
96373 CAAAAATCATGCAAAACTGAGCCGGGACCCCGGAACGTGTTCATAG-CAAAAAACCGTGATGGTT
1 CAAAAATCATCCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCAAAAACCGTGATGGTT
* * * * * * * **
96437 AGTATACGGGTTCGGCTAAAATGTTGAAAAAATTGATCCGAAAATTTTTTCCCT-AAGTTATTTT
66 AGTACAC-GATT----T---CTGCT--AAAAACTGACCCGAAAATTTTTTTCCTGAA-TT-TTCC
* * * * * * *
96501 GCGACAATAGTTAGGAAAAATATATAATTCA-ACCGAAAAAAATTGAAGTGTTTTTCACGCTTCT
119 GCCACAATACTCAGAAAAAATATATAATTCACACC-AAAAAAATTGACG-GCTTTTCACTCTTCT
* * * *
96565 AATATCGTTTTTCCATTTTTTTTCCGTATTTATTTCAAATTAAATCGAAAGAAGATACAGATGCT
182 AATATCGTTTTTCCA-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAAGAAGATTCAGATGCT
* * *
96630 CGTAAAAATAAGTCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAG
246 CGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTCGATGAATATAGATATTTCAAG
96695 GAGTCTTTATGC
311 GAGTCTTTATGC
* * *
96707 CAAAACTCATCCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCCAAAACCGTGATAGTT
1 CAAAAATCATCCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCAAAAACCGTGATGGTT
* *
96772 AGTACACAATTTCTGCTAAAAACTGACCCGCAAAATTTTTTTCCTGAATTTTCCGCCAAAATACT
66 AGTACACGATTTCTGCTAAAAACTGACCCG-AAAATTTTTTTCCTGAATTTTCCGCCACAATACT
* ** *
96837 GAGAAAAAATATATAATTCGACACCAAAAGTATTGACGGACATTTCACTCTTCTAATATCGTTTT
130 CAGAAAAAATATATAATTC-ACACCAAAAAAATTGACGG-CTTTTCACTCTTCTAATATCGTTTT
96902 TCCA-TTTTTTCCGAATTAATTTCTAATTAAATCGAAAGAAGATTCAGATGCTCGTAAAAACAAA
193 TCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAAGAAGATTCAGATGCTCGTAAAAACAAA
* * *
96966 TCCTTATATCCAATGTGGCTGAGATTCGCTTCGATGAATATAGATATTTCAAGGAGT-TTT-TGC
258 TCCTTAAATCCAATGTGGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTATGC
97029 C
1 C
97030 CCAAAAACCA
Statistics
Matches: 534, Mismatches: 98, Indels: 51
0.78 0.14 0.07
Matches are distributed among these distances:
322 22 0.04
323 41 0.08
324 108 0.20
325 39 0.07
326 52 0.10
327 9 0.02
330 3 0.01
332 15 0.03
333 41 0.08
334 181 0.34
335 23 0.04
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (322 bp):
CAAAAATCATCCAAAACTGAGCCGGGTCCCCGAAACGCGTTTTTAGCCCAAAAACCGTGATGGTT
AGTACACGATTTCTGCTAAAAACTGACCCGAAAATTTTTTTCCTGAATTTTCCGCCACAATACTC
AGAAAAAATATATAATTCACACCAAAAAAATTGACGGCTTTTCACTCTTCTAATATCGTTTTTCC
ATTTTTTTCCGAATTAATTTCTAATTAAATCGAAAGAAGATTCAGATGCTCGTAAAAACAAATCC
TTAAATCCAATGTGGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTATGC
Found at i:99072 original size:323 final size:324
Alignment explanation
Indices: 98300--99100 Score: 839
Period size: 332 Copynumber: 2.5 Consensus size: 324
98290 ATAGACGAAC
* * * *
98300 TTTTCACGCTTCTAATAATG-TTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
1 TTTTCAAGCTCCTAATATTGTTTTTCCATTTTTT-CGAATTAATTTCTAATTAAATCGAAAGAAG
* * * * * *
98364 ATTCAGATGCTCGTAAAAATAAATCGTTACATCAAATTTGGCTGGGGTTTGGTTCGATGAATATA
65 ATTCAGATGCTCGTAAAAATAAATCATTAAATCCAATGTGGCTGAGATTTGGTTCGATGAATATA
* * * * * * * *
98429 GGTATTTCAAGGATTCTATACGCCAAAAATCATGCAAAACTGGGCCGGGACCCTGGAATGTGTTT
130 GATATTTCAAGGAGTCTATACGCCAAAAATCATCCAAAACTGAGCCGGGACCCCGAAACGCGTTT
* * ** *
98494 TTTGCAAAATTCCGCGATGCTTACTATACAGTTCGGCTAAAATTTTGAAAGATTGACCCGAAAAT
195 TTAGCAAAATACCGCGATGCTTACTATACAGTTCGGCTAAAATGCTGAAAGAGTGA--C-AAAAT
***** * *
98559 TTTTTCCTCAATTATTTTGTGACAATAGTCAGGAAAAATATATAATTCAACCGAAAAAAAATTGA
257 TTTTTCCTCAATTATTCCACAACAATACTCAGAAAAAATATATAATTCAACC--AAAAAAATTGA
98624 AGGGT
320 AGGGT
* * * * *
98629 TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTCGGAATTTATTTCAAATTAAATCGAAAGA
1 TTTTCAAGCTCCTAATATTGTTTTTCCA--TTTTTTC-GAATTAATTTCTAATTAAATCGAAAGA
* * *
98694 AGATACATATGCTCGTAAAAATAAATCATTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATA
63 AGATTCAGATGCTCGTAAAAATAAATCATTAAATCCAATGTGGCTGAGATTTGGTTCGATGAATA
* * * *
98759 TAGATTTTTCAAGGAGTCTATATGCCAAAACTCATCCAAAACTGAGCCGGGGCCCCGAAACGCGT
128 TAGATATTTCAAGGAGTCTATACGCCAAAAATCATCCAAAACTGAGCCGGGACCCCGAAACGCGT
* * * *
98824 TTTTAGCCCAAAA-ACCGTGATTG-TTAGTACATA-ATTTCGGCTAAAA-GCTG-AAGCGT-A-A
193 TTTTAG--CAAAATACCGCGA-TGCTTACT--ATACAGTTCGGCTAAAATGCTGAAAGAGTGACA
* * * *
98882 AATTTTTTTCCTGAATT-TTCCACAACAATACTCAGAAAAAATTTATAATTCTACACC-AAAAAT
253 AAATTTTTTCCTCAATTATTCCACAACAATACTCAGAAAAAATATATAATTC-A-ACCAAAAAAA
*
98945 TTGACGGGT
316 TTGAAGGGT
* *
98954 TTTTCAATCTCCTAATATTGTTTTTCCATTTTTGTCGTATTAATTTCTAATTAAATCGAAAGAAG
1 TTTTCAAGCTCCTAATATTGTTTTTCCATTTTT-TCGAATTAATTTCTAATTAAATCGAAAGAAG
* * * * * * *
99019 ATTCAGACGCTCATAAAAACAAATCCTTATATCCAATGTGGTTGAGATTTGGTTCGATGAAAATA
65 ATTCAGATGCTCGTAAAAATAAATCATTAAATCCAATGTGGCTGAGATTTGGTTCGATGAATATA
99084 GATATTTCAAGGAGTCT
130 GATATTTCAAGGAGTCT
99101 TTGCCCTAAA
Statistics
Matches: 395, Mismatches: 65, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
323 102 0.26
324 2 0.01
325 37 0.09
326 26 0.07
327 17 0.04
328 3 0.01
329 18 0.05
330 7 0.02
331 2 0.01
332 148 0.37
333 11 0.03
334 19 0.05
335 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (324 bp):
TTTTCAAGCTCCTAATATTGTTTTTCCATTTTTTCGAATTAATTTCTAATTAAATCGAAAGAAGA
TTCAGATGCTCGTAAAAATAAATCATTAAATCCAATGTGGCTGAGATTTGGTTCGATGAATATAG
ATATTTCAAGGAGTCTATACGCCAAAAATCATCCAAAACTGAGCCGGGACCCCGAAACGCGTTTT
TAGCAAAATACCGCGATGCTTACTATACAGTTCGGCTAAAATGCTGAAAGAGTGACAAAATTTTT
TCCTCAATTATTCCACAACAATACTCAGAAAAAATATATAATTCAACCAAAAAAATTGAAGGGT
Found at i:99825 original size:545 final size:544
Alignment explanation
Indices: 98790--100199 Score: 1577
Period size: 544 Copynumber: 2.6 Consensus size: 544
98780 ATGCCAAAAC
* * * **
98790 TCATCCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAACCGTGATTGTTAGTACA
1 TCATGCAAAACTGAGACGGGGCCCCGAAACGCGTTTTCAGCCCAAAAACCGTGACGGTTAGTACA
* *
98855 TAATTTCGGCTAAAAGCTGAAGCGTAAAATTTTTTTCCTGAATTTTCCACAACAATACTCAGAAA
66 TAATTTCGGCTAAAAACTGAACCG-AAAATTTTTTTCCTGAATTTTCCACAACAATACTCAGAAA
** * * * * * *
98920 AAATTTATAATTCTACACCAAAAATTTGACGGGTTTTTCAATCTCCTAATATTGTTTTTCCATTT
130 AAATAAATAATTCAACACCAAAAAATTGACGGGCTTTTCAAGCTCCGAATATCGTTTTTCCATTT
* * *
98985 TTGTCGTATTAATTTCTAATTAAATCGAAAGAAGATTCAGACGCTCATAAAAACAAATCCTTATA
195 TTGTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGACGCTCATAAAAACAAATCCTTACA
* *
99050 TCCAATGTGGTTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCCCTAAAACCA
260 TCCAATGTGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCCCAAAAACCA
** * * *
99115 TGCAAAACTTAGTCGGTTCAAATCAGTATCCGGAAAGGTGTTATAATAGTTAAATCGACTTATGG
325 TGCAAAACTTAGTCAATTCAAATCAGTATCCGGAAAGGTATTATAATAGTCAAACCGACTTATGG
* *
99180 ATTGAAAGTTATGACCTTTTTAAGTTGACCCCTCTCGAGGATCTTCAAGCCCCAAATCCAAAACG
390 ATTGAAAGTTATGACCTTTTTAAGTTGACCCCTCTCGAGGAACTTCAAGCCCAAAATCCAAAACG
*
99245 TTACACACCCTTTCGAACGGGCTTCTGACAGTCCATACGATCCATATATGATAGGTCTATCTCAT
455 TTACACACCCTTTCGAACGGACTTCTGACAGTCCATACGATCCATATATGATAGGTCTATCTCAT
*
99310 CCACATCAAGTTTTTTTTGTCAAATA
520 CCACATCAAG-TTTTTCTGTCAAATA
* *
99336 TCATGCAAAACTGATACGGGGCCCCGAAACGCGTTTTCAGCCCAAAAACCGTTACGGTTAGTACA
1 TCATGCAAAACTGAGACGGGGCCCCGAAACGCGTTTTCAGCCCAAAAACCGTGACGGTTAGTACA
* * * * * **
99401 TGATTTCGGCTAAAAACT-AACCCG-AATTTTTTTTCCTGAATTTTCTACTACAATACTCATATT
66 TAATTTCGGCTAAAAACTGAA-CCGAAAATTTTTTTCCTGAATTTTCCACAACAATACTCAGAAA
* * *
99464 AAATAAATAATTCAACGCCAAAAAATTGACGGGCTTTTCACGCTTCGAATATCG-TTTTCCATTA
130 AAATAAATAATTCAACACCAAAAAATTGACGGGCTTTTCAAGCTCCGAATATCGTTTTTCCATT-
* * *
99528 TTT-TCGGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCGTTA
194 TTTGTC-GAATTAATTTCTAATTAAATCGAAACAAGATTCAGACGCTCATAAAAACAAATCCTTA
* * * *
99592 CATCGAATTTGGCTGAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCTTTGCCCCAAAAA
258 CATCCAATGTGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTG-CCCAAAAA
* *
99657 CCATGCCAAACTTATTCAATTCAAATCAGTATCCGGAAAGGTATTATAATAGTCAAACCGACTTA
322 CCATGCAAAACTTAGTCAATTCAAATCAGTATCCGGAAAGGTATTATAATAGTCAAACCGACTTA
* * *
99722 TGGTTTGAAAGTTATGACCTTTTTAAGTTGACCCCTCTCTAGGAACTTCAGGCCCAAAATCCAAA
387 TGGATTGAAAGTTATGACCTTTTTAAGTTGACCCCTCTCGAGGAACTTCAAGCCCAAAATCCAAA
* ** * * *
99787 ATGTTACACGTCCTTTCGAACGGACTTTTGGCAGTCCATACGATCCATATATGATATGTCTATCT
452 ACGTTACACACCCTTTCGAACGGACTTCTGACAGTCCATACGATCCATATATGATAGGTCTATCT
*
99852 CATCCGCATCAAGTTTTTCTGTCAAATA
517 CATCCACATCAAGTTTTTCTGTCAAATA
* * * * * * * * *
99880 TCATGC---ACTAAGCCGGGACCCCGGAACGTGTTTTTAG-CAAAAAACCGTGATGGTTAGTATA
1 TCATGCAAAACTGAGACGGGGCCCCGAAACGCGTTTTCAGCCCAAAAACCGTGACGGTTAGTACA
*** * * * * *** *
99941 CGGTTTTGGCTAAAATTTTGAAAAAAATTGATCCGAAAA-TTTTTTCCTCAATTATTTTGCGACA
66 TAATTTCGGC--------T---AAAAACTGAACCGAAAATTTTTTTCCTGAATT-TTCCACAACA
* * * * * * * * *
100005 ATAGT-AAAGAAAAATATATAATTCAAC-CGAAAAAAATTTAAGGGTTTTTCACA-CTTCTAATA
119 ATACTCAGA-AAAAATAAATAATTCAACAC-CAAAAAATTGACGGGCTTTTCA-AGCTCCGAATA
* * * * ** * * *
100067 TCGTTTTTCCATTTTTTTCCAAATTTATTTCAAATTAAATCGAAAGTAGATACAGAAGCTCGTAA
181 TCGTTTTTCCATTTTTGT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGACGCTCATAA
* * * * * * *
100132 AAATAAATTCTTGA-ATCGAATGTGGCTGAGATGTGGTTAGATGAATATAGATATTACAAGGAGT
245 AAACAAATCCTT-ACATCCAATGTGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGT
100196 CTTT
309 CTTT
100200 ATGCCGAAAC
Statistics
Matches: 732, Mismatches: 107, Indels: 43
0.83 0.12 0.05
Matches are distributed among these distances:
540 27 0.04
541 24 0.03
543 11 0.02
544 202 0.28
545 197 0.27
546 76 0.10
548 1 0.00
551 25 0.03
552 61 0.08
553 106 0.14
554 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (544 bp):
TCATGCAAAACTGAGACGGGGCCCCGAAACGCGTTTTCAGCCCAAAAACCGTGACGGTTAGTACA
TAATTTCGGCTAAAAACTGAACCGAAAATTTTTTTCCTGAATTTTCCACAACAATACTCAGAAAA
AATAAATAATTCAACACCAAAAAATTGACGGGCTTTTCAAGCTCCGAATATCGTTTTTCCATTTT
TGTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGACGCTCATAAAAACAAATCCTTACAT
CCAATGTGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCCCAAAAACCAT
GCAAAACTTAGTCAATTCAAATCAGTATCCGGAAAGGTATTATAATAGTCAAACCGACTTATGGA
TTGAAAGTTATGACCTTTTTAAGTTGACCCCTCTCGAGGAACTTCAAGCCCAAAATCCAAAACGT
TACACACCCTTTCGAACGGACTTCTGACAGTCCATACGATCCATATATGATAGGTCTATCTCATC
CACATCAAGTTTTTCTGTCAAATA
Found at i:101645 original size:332 final size:332
Alignment explanation
Indices: 100871--103437 Score: 3738
Period size: 332 Copynumber: 7.8 Consensus size: 332
100861 ATTTTCTGCT
* * * * * * *
100871 ACAATACTCAGAAAAATTAAATAATTCAACGCCAAAAAAATTGATGGGCCTTTCACGCTTCTAAT
1 ACAATACTCAGAAAAA-TATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAA
* * * *
100936 ATCG-TTTTCAATTTTTTCCCTAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTA
65 ATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCGTA
* * *
101000 AAAAAAAATCGTTACATCGAATTTGGCTGGGATTTGCTTCGATGAATATAGGTATTTCAAGGTGT
130 AAAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGT
* * *
101065 CTTTACGCCAAAAATCTTACAAAACTAAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACC--
195 CTTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACCGT
* * *
101128 ----G-T-G--CACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAATTTTTTTTCCTTAAT
260 GATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAA-ATTTTTTCCTCAAT
101185 TATTTTGCG
324 TATTTTGCG
*
101194 ACAATACTCAGAAAAATATATAATTCAATACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
1 ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
* *
101259 TCGTTTTTCCATTTTTTTCCGAATTAGTTTCTAATTAAATCGAATCAAGATTCAGATGCTCGAAA
66 TCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCGTAA
* * *
101324 AAACAAATCGTTACATCGAATTTGGCTGCGTTTTGGTTCGATAAATATAGGTATTTCAAGGAGTC
131 AAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGTC
*
101389 TTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAATCCGTG
196 TTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACCGTG
* **
101454 ATGGTTAGTATACGGTTTCGGCAAAAATTTTGAAAAAATTGACATGAAAATTTTTTCCTCAATTA
261 ATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAATTTTTTCCTCAATTA
101519 TTTTGCG
326 TTTTGCG
* *
101526 ACAATCCTCAGAAAAATATATAATTCAACACCAAAAATGTT-ACGGGCTTTTCACTCTTCTAAAA
1 ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
* *
101590 TCGTTCTTCCATTTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCTTA
66 TCGTTTTTCCA-TTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCGTA
* *
101655 AAAACAAATCGTTACCTAGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGT
130 AAAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGT
* *
101720 CTTTACGCCGAAAATCATGCAAAACTGAGCCGGGACCCCGGAATGTGTTTTTAGGCAAAAAACCG
195 CTTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTA-GCAAAAAACCG
*
101785 TGATGGTTAGTATACTGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAA-TTTTTCCTCAAT
259 TGATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAATTTTTTCCTCAAT
101849 TATTTTGCG
324 TATTTTGCG
101858 ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
1 ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
* * * * *
101923 TCGTTTTACCATTTTTTTCTGAATTAGTTTCTAATTAAATCCAATCGAGATTCAGATGCTCGTAA
66 TCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCGTAA
* *
101988 AAACAAATCGTTACATCAAATTTGGATGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGTC
131 AAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGTC
*
102053 TTTAGGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGC-AAAAACCGTG
196 TTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACCGTG
* *
102117 ATGGTTAGTATACGGTTTCGACTAAAATTTTGAAAAAATTGACCCGAAAATTTTTTCCTCATTTA
261 ATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAATTTTTTCCTCAATTA
102182 TTTTGCG
326 TTTTGCG
*
102189 ACAATACTTAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
1 ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
*
102254 TCGTTTTTCCATTTTTTTCCGAATTAGTTTCTAATTAAATCGAATCAAGAATTCAGATGCTCGTA
66 TCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAG-ATTCAGATGCTCGTA
** *
102319 AAAACAAATTATTACATCGAATTTGGCTGGGATTCGGTTCGATGAATATAGGTATTTCAAGGAGT
130 AAAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGT
*
102384 CTTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAACGTGTTTTTAGC-AAAAACCGT
195 CTTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACCGT
*
102448 GATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGTTTTTTCCTCAATT
260 GATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAATTTTTTCCTCAATT
102513 ATTTTGCG
325 ATTTTGCG
* *
102521 ACAATACTCAGAAAAATATTTAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTTTAAAA
1 ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
*
102586 TCGTTTTTCCATTTTTTTCCGAATTAGTTTCTAATTAAATCGAATCAAGATTCAGATGCTCGTAA
66 TCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCGTAA
*
102651 AAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGTAGTC
131 AAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGTC
* * * *
102716 TTTACGCCAAAAATCATGCAAAACTGAGTCGGGACCCCGGAACGTGTTTTTAGGAAAAAACTGTG
196 TTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACCGTG
*
102781 ATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAATTTTTTTTCTCAATT
261 ATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAA-TTTTTTCCTCAATT
102846 ATTTTGCG
325 ATTTTGCG
* * * * ** * * *
102854 ACAATAGTCAGGAAAAATATAAAATTCAAC-CTAAAAAAAATTGAATGGTTTTTCACGCTTCCAA
1 ACAATACTCA-GAAAAATATATAATTCAACAC-CAAAAATATTGACGGGCTTTTCACTCTTCTAA
* * * * ** *
102918 TATTGTTTTTCCATTTTTTTCCGAATTTATTTCAAATTAAATCGAAAGAAGATACAGATGCTCGT
64 AATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCGT
* * * * * ** * *
102983 AAAAATAAATCATTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATATAGATATTTCAAGGAG
129 AAAAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAG
* * * * * * *
103048 TCTTTATGCCAAAACTCATCCAAAACTGAGCCGGGGCCCC-GAAACGCGTTTTTATCCTAAAAAC
194 TCTTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAA-GTGTTTTTA-GCAAAAAAC
* * ** * *
103112 TGTGATGGTTAGTACACAATTTCAGC--------T--AAAAACTGACCCGCAAAATTTTTTTCCT
257 CGTGATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCG-AAAA-TTTTTTCCT
* * *
103167 GAATT-TTCCT-CC
320 CAATTATT-TTGCG
* *
103179 ACAATACTCAGAAAAATATATAATTCAACACCAAAACTATTGAC-GGCGTTTTCACTCTTCTAAT
1 ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGC-TTTTCACTCTTCTAAA
* * * *
103243 ATTGTTTTTCCATTTTTTTCCGATTTAATTTCTAATTAAATCGAAAT-AAGATTAAAATGCTCGT
65 ATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCG-AATCAAGATTCAGATGCTCGT
*
103307 AAAAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGTAG
129 AAAAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAG
* * *
103372 TCTTTATGCCAAAACTCATGCAAAACTGAGCCGGGACCCCGGAACGTGTTTTTAGCAAAAAACCG
194 TCTTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACCG
103437 T
259 T
Statistics
Matches: 2040, Mismatches: 176, Indels: 56
0.90 0.08 0.02
Matches are distributed among these distances:
322 44 0.02
323 199 0.10
324 196 0.10
325 30 0.01
326 18 0.01
327 1 0.00
329 1 0.00
330 59 0.03
331 294 0.14
332 815 0.40
333 159 0.08
334 196 0.10
335 28 0.01
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (332 bp):
ACAATACTCAGAAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTTCACTCTTCTAAAA
TCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTCGTAA
AAACAAATCGTTACATCGAATTTGGCTGGGATTTGGTTCGATGAATATAGGTATTTCAAGGAGTC
TTTACGCCAAAAATCATGCAAAACTGAGCCGGGACCCCGGAAAGTGTTTTTAGCAAAAAACCGTG
ATGGTTAGTATACGGTTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAATTTTTTCCTCAATTA
TTTTGCG
Done.