Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020869.1 Corchorus olitorius cultivar O-4 contig20902, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121932

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2396--2435
21
1.9
21
94
0
71
42
22
15
20
1.88
14503--14564
31
2.0
31
87
0
88
33
30
6
29
1.83
15074--15122
24
2.0
24
96
0
89
28
36
0
34
1.58
15379--15421
21
2.0
22
90
4
70
27
9
27
34
1.88
15181--15566
138
2.8
139
88
2
600
29
24
18
26
1.98
15514--16002
168
3.0
168
91
3
750
34
18
23
23
1.96
16040--16086
21
2.2
21
100
0
94
23
10
29
36
1.89
16209--16236
14
2.0
14
100
0
56
35
0
28
35
1.58
18210--18320
54
2.0
55
85
3
152
50
5
12
31
1.63
29252--29283
16
2.0
16
100
0
64
18
18
6
56
1.62
36512--36765
106
2.4
105
90
2
386
42
9
6
42
1.63
38279--38344
22
2.9
22
91
8
98
25
6
0
68
1.13
38307--38418
31
3.3
31
65
23
80
30
8
3
58
1.44
108085--108238
76
2.0
76
94
2
274
22
21
24
31
1.98
110112--110142
15
2.1
15
100
0
62
32
22
12
32
1.92
110829--110853
5
5.0
5
100
0
50
60
0
0
40
0.97
112832--112861
2
15.5
2
93
6
53
50
0
0
50
1.00
115525--115549
1
25.0
1
100
0
50
0
0
0
100
0.00
116734--116766
16
2.1
16
100
0
66
42
6
6
45
1.53
118249--119159
228
4.0
228
85
2
1035
27
27
24
20
1.99
119260--119284
11
2.3
11
100
0
50
8
36
0
56
1.29
120289--121913
427
3.8
426
93
1
2714
26
17
26
29
1.97

Tables:   1

The End!