Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020870.1 Corchorus olitorius cultivar O-4 contig20903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51217
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:1447 original size:427 final size:427
Alignment explanation
Indices: 1--1594 Score: 2692
Period size: 427 Copynumber: 3.7 Consensus size: 427
* * * * *
1 ATGCAAGTGGCCAACGAAGTGAGACACTTGCTAGCTTTTTCTTTCGTTCTTGGCCAAACGTTCTA
1 ATGCAAGTGGCCAACGAAATGACACACTTGCTAGCTTATTATTTCGTTCTTGGCCAAACGTTCCA
* * *
66 TGTCATCCGTAGGGCATCTCGGTTTTTGCTACCAATGTTCAACCATCTCGGATTGAACTGAAATT
66 TGTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
* * *
131 TTTGG-GATTACTTTTTTCTTGAGTCTCTTTTTCTTTTCACCATTTGGTTTGTCTGATTTTGGGA
131 TTTGGTG-TTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTCTGATTTTGGGA
* **
195 GACCGAGGAGAAACTGTAGAGAATGGGGTTCACTGGGAGACAAGGAGAGAATCGTAG-TTTTTTT
195 GACCGAGGAGAAACTGTAGAGAATGGGG-TCACCGGGAGACAAGGAGAGAAGAGTAGTTTTTTTT
* * *
259 TAATAGACAAAAAGTGAGAAATCAGAATTGAGCTGCGAAGGGAATGCATATCTTTTTGGTGAAAT
259 TAATAGAAAAAAAGTGAGAAATCAGAATTGAGCTGAGAAGGGAATGCATACCTTTTTGGTGAAAT
* *
324 TGACGTCAGTGTAGGGATTGGCAGCGGCAGAACATGACTTTTTCTCGCATTGTAGAGGAGGGTAA
324 TAACGTCAGTGTAGGGATTGGCGGCGGCAGAACATGACTTTTTCTCGCATTGTAGAGGAGGGTAA
389 GGGAGCTCTAGGATCTCATCGTTCGAGCAGATCGGAGCG
389 GGGAGCTCTAGGATCTCATCGTTCGAGCAGATCGGAGCG
*
428 ATGCAAGTGGCCAACGAAATGACACACTTTCTAGCTTATTATTTCGTTCTTGGCCAAACGTTCCA
1 ATGCAAGTGGCCAACGAAATGACACACTTGCTAGCTTATTATTTCGTTCTTGGCCAAACGTTCCA
493 TGTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
66 TGTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
*
558 TTTGGTGTTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTGTGATTTTGGGAG
131 TTTGGTGTTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTCTGATTTTGGGAG
623 ACCGAGGAGAAACTGTAGAGAATGAGGGTCACCGGGAGACAAGGAGAGAAGAGTAGTTTTTTTTT
196 ACCGAGGAGAAACTGTAGAGAATG-GGGTCACCGGGAGACAAGGAGAGAAGAGTAGTTTTTTTTT
* *
688 AATAGAAAAAAAAGTGAGAAATCAGAAATAAGCTGAGAAGGGAATGCATACCTTTTTGGTGAAAT
260 AATAG-AAAAAAAGTGAGAAATCAGAATTGAGCTGAGAAGGGAATGCATACCTTTTTGGTGAAAT
753 TAACGTCAGTGTAGGGATTGGCGGCGGCAGAACATGACTTTTTCTCGCATTGTAGAGGAGGGTAA
324 TAACGTCAGTGTAGGGATTGGCGGCGGCAGAACATGACTTTTTCTCGCATTGTAGAGGAGGGTAA
818 GGGAGCTCTAGGATCTCATCGTTCGAGCAGATCGGAGCG
389 GGGAGCTCTAGGATCTCATCGTTCGAGCAGATCGGAGCG
* * * * *
857 ATGCAAGTGGCCAACGAAGTGAGACACTTGCTAGCTTTTTCTTTCGTTCTTGGCCAAACGTTCTA
1 ATGCAAGTGGCCAACGAAATGACACACTTGCTAGCTTATTATTTCGTTCTTGGCCAAACGTTCCA
922 -GTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
66 TGTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
*
986 TTTGGGGTTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTCTGATTTTGGGAG
131 TTTGGTGTTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTCTGATTTTGGGAG
* *
1051 ACCGAGGAGAAACTGTAGAGAATGGTGTCACCGGGAGACAGGGAGAGAAGAGTAGTTTTTTTTTA
196 ACCGAGGAGAAACTGTAGAGAATGGGGTCACCGGGAGACAAGGAGAGAAGAGTAGTTTTTTTTTA
*
1116 ATAGAAAAAAAGTGAGAAATCAGAATTGAGCTGAGAAGGGAATGCACACCTTTTTGGTGAAATTA
261 ATAGAAAAAAAGTGAGAAATCAGAATTGAGCTGAGAAGGGAATGCATACCTTTTTGGTGAAATTA
* * * * *
1181 ACGTCAGTGTAGGGATTGGCGGCGACGGAACATGACTTTTTCTCGAATTGTAGAGAAGCGTAAGG
326 ACGTCAGTGTAGGGATTGGCGGCGGCAGAACATGACTTTTTCTCGCATTGTAGAGGAGGGTAAGG
1246 GAGCTCTAGGATCTCATCGTTCGAGCAGATCGGAGCG
391 GAGCTCTAGGATCTCATCGTTCGAGCAGATCGGAGCG
*
1283 ATGCAAGTGGCCAACGAAATGACACACTTTCTAGCTTATTATTTCGTTCTTGGCCAAACGTTCCA
1 ATGCAAGTGGCCAACGAAATGACACACTTGCTAGCTTATTATTTCGTTCTTGGCCAAACGTTCCA
1348 TGTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
66 TGTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
* *
1413 TTTGGTGTTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTGTGATTTTGGGAA
131 TTTGGTGTTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTCTGATTTTGGGAG
* * * *
1478 ACCGAGGAGAAACTGTAGAGAAAGGGGTCACCGGGAGACAGGGAGAGAAGAGTAGTTTTCTTTGA
196 ACCGAGGAGAAACTGTAGAGAATGGGGTCACCGGGAGACAAGGAGAGAAGAGTAGTTTTTTTTTA
* * * *
1543 AAAGAAAAAAA-TGAGAAATCAGAATTGAGTTGGGAAGGGAATGCAGACCTTT
261 ATAGAAAAAAAGTGAGAAATCAGAATTGAGCTGAGAAGGGAATGCATACCTTT
1595 CTGGCACTGG
Statistics
Matches: 1104, Mismatches: 58, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
426 252 0.23
427 469 0.42
428 168 0.15
429 215 0.19
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (427 bp):
ATGCAAGTGGCCAACGAAATGACACACTTGCTAGCTTATTATTTCGTTCTTGGCCAAACGTTCCA
TGTCATCCGTAGGGCATCTCGGTTTTCGCTACCCATGTTCAACCATCTCGGATTGAACTCAAATT
TTTGGTGTTTCTTTTTTCCTCAGTCTCTTTTTCTTTTCACCATTTGGTTTGTCTGATTTTGGGAG
ACCGAGGAGAAACTGTAGAGAATGGGGTCACCGGGAGACAAGGAGAGAAGAGTAGTTTTTTTTTA
ATAGAAAAAAAGTGAGAAATCAGAATTGAGCTGAGAAGGGAATGCATACCTTTTTGGTGAAATTA
ACGTCAGTGTAGGGATTGGCGGCGGCAGAACATGACTTTTTCTCGCATTGTAGAGGAGGGTAAGG
GAGCTCTAGGATCTCATCGTTCGAGCAGATCGGAGCG
Found at i:4201 original size:113 final size:113
Alignment explanation
Indices: 4000--4222 Score: 356
Period size: 113 Copynumber: 2.0 Consensus size: 113
3990 CTGAAAATGA
* * * *
4000 TAAATTTCCAAATCAAAATTTAGGGATACAGAAAATACAATGCAACACAATTATCCAGAATCACA
1 TAAATTTCCAAATCAAAATTCAGGAATACAGAAAATACAATCCAACACAATCATCCAGAATCACA
*
4065 TATGCAAACAAGGAATAAGATTTGACCCGAAAGAAAGCAGTGCAGTGG
66 TATGCAAACAAGGAATAAAATTTGACCCGAAAGAAAGCAGTGCAGTGG
* ** *
4113 TAAATTTCCAAATCAAAATTCAGGAATACCGACCATACAATCCAACACAATCATCCAGAATCACG
1 TAAATTTCCAAATCAAAATTCAGGAATACAGAAAATACAATCCAACACAATCATCCAGAATCACA
*
4178 TATGCAAACAAGGGATAAAATTTGACCCGAAAGAAAGCAGTGCAG
66 TATGCAAACAAGGAATAAAATTTGACCCGAAAGAAAGCAGTGCAG
4223 ATTAAATCAG
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
113 100 1.00
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (113 bp):
TAAATTTCCAAATCAAAATTCAGGAATACAGAAAATACAATCCAACACAATCATCCAGAATCACA
TATGCAAACAAGGAATAAAATTTGACCCGAAAGAAAGCAGTGCAGTGG
Found at i:6261 original size:19 final size:19
Alignment explanation
Indices: 6237--6274 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
6227 CCTAAAACCT
6237 CCCCAAATCTCAAACCCTA
1 CCCCAAATCTCAAACCCTA
* *
6256 CCCCAAATTTTAAACCCTA
1 CCCCAAATCTCAAACCCTA
6275 ATTTCCTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (19 bp):
CCCCAAATCTCAAACCCTA
Found at i:12761 original size:5 final size:5
Alignment explanation
Indices: 12751--12789 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
12741 TAAAAGGACA
* *
12751 TCCCG TCCCG TCCCA TCCCG TCCCG TCCCA TCCCG TCCC
1 TCCCG TCCCG TCCCG TCCCG TCCCG TCCCG TCCCG TCCC
12790 TTACTGGTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.05, C:0.62, G:0.13, T:0.21
Consensus pattern (5 bp):
TCCCG
Found at i:12769 original size:15 final size:15
Alignment explanation
Indices: 12749--12789 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
12739 ACTAAAAGGA
12749 CATCCCGTCCCGTCC
1 CATCCCGTCCCGTCC
12764 CATCCCGTCCCGTCC
1 CATCCCGTCCCGTCC
12779 CATCCCGTCCC
1 CATCCCGTCCC
12790 TTACTGGTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.07, C:0.61, G:0.12, T:0.20
Consensus pattern (15 bp):
CATCCCGTCCCGTCC
Found at i:16807 original size:31 final size:30
Alignment explanation
Indices: 16742--16845 Score: 102
Period size: 31 Copynumber: 3.4 Consensus size: 30
16732 ACAAAAATAT
* * * *
16742 TCAATTTCGTCCTTGTACTCAAACA-TCGG
1 TCAATTTAGTCCATGTACTCAAAAATTAGG
16771 TCAATTTAGTCCATGTACTCAAAATATTAGG
1 TCAATTTAGTCCATGTACTCAAAA-ATTAGG
* * **
16802 TCAATTTAGTCCCTATACTCATGGAATTAGG
1 TCAATTTAGTCCATGTACTCA-AAAATTAGG
*
16833 TCAATTGAGTCCA
1 TCAATTTAGTCCA
16846 ATCAATAATT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 21 0.34
30 1 0.02
31 39 0.63
32 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (30 bp):
TCAATTTAGTCCATGTACTCAAAAATTAGG
Found at i:25597 original size:13 final size:14
Alignment explanation
Indices: 25572--25601 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
25562 CTCGAAAAAT
25572 ATTGCCGACGTGGC
1 ATTGCCGACGTGGC
25586 ATTGCC-ACGTGGC
1 ATTGCCGACGTGGC
25599 ATT
1 ATT
25602 TTGATCTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.27
Consensus pattern (14 bp):
ATTGCCGACGTGGC
Found at i:27306 original size:23 final size:24
Alignment explanation
Indices: 27272--27317 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
27262 TCTCTCTCTT
27272 TTTCTGCAAAAGGG-GTTCTTTTG
1 TTTCTGCAAAAGGGTGTTCTTTTG
*
27295 TTTCTGTC-AAAGGGTTTTCTTTT
1 TTTCTG-CAAAAGGGTGTTCTTTT
27318 TGCATGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.15, C:0.13, G:0.22, T:0.50
Consensus pattern (24 bp):
TTTCTGCAAAAGGGTGTTCTTTTG
Found at i:35062 original size:2 final size:2
Alignment explanation
Indices: 35055--35092 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
35045 CGAGTGCCTA
35055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35093 TGCTAGTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45915 original size:323 final size:323
Alignment explanation
Indices: 44855--46967 Score: 2863
Period size: 323 Copynumber: 6.5 Consensus size: 323
44845 GAAACATACG
* ** * * * * *
44855 CGGTTTATGGCTAAAAACGCGTTCCCGGGATCTGGCTCAGTTTTGTAAGATTTTTGAC-GTAAAG
1 CGGTTTTTGGCTAAAAACGCGTTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAG-AAAG
*** * * * * * * *
44919 ACTATTTGAAATATCTTTATTCATCGAATCAAATCTCAGCCATAC-TGAATATAAGGATTTGTTT
65 ACTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCA-CCTTAAATTTAAGGATTTGTTT
* * * * * *
44983 TTTCGAGCATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-GAAAAATATGGAAAAAC
129 TTACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAAT-TGGAAAAAT
** * ** *
45047 GATATTAGAAGCGTGAAAAGCCCGTCAAGATTTTTGGCGTGGAATTATATATTTTTTCTGAGTAT
193 GATATTAGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTAT
* ** *
45112 TGTGGCAAAAAATTGAGAAAAAACTTTTCGGATCAGTTTTTATAACGAAATCGTGTACT-ATCAT
258 TGTGGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTA-GCCGAAATCGTGTACTAACCAT
*
45176 AA
322 CA
* ** ** * *
45178 CGGTTTTTGGCTATAAACGCGTT-CCGGG--AAGGCTCAATTTTGCATGTTTTTTAGC-GCAAAG
1 CGGTTTTTGGCTAAAAACGCGTTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAG-AAAG
* * * * * * ** *
45239 ACTCCTTGAAATACCTATATTCATCGAACCAAATGTCAGCCACATTGGATATAAGGATTTGTTTT
65 ACTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTT
* * * * *
45304 CAGGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATCT-GAAAAAT
130 TACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGG-AAAAAAAT-TGGAAAAAT
*
45368 GATATTAGAAGCGTGAAAAGACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTAT
193 GATATTAGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTAT
* * * * *** * *
45433 TATAGCAAAAAAGTCAGGAAAAAAAAATTCGGGTCAGTTTTTAGCTGAAATCGTGTACGT----T
258 TGTGGCAAAAAATTGA-GAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAC-TAACCA
45494 TCA
321 TCA
* ** * *
45497 CGGTTTTTGAGCTAAAAACGGGTTTCGGGGGCCCCGACTCAGCTTTGCATGATTTTAGGCAGAAA
1 CGGTTTTTG-GCTAAAAACGCG-TTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAA
* *
45562 GACTCCGTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAAATTTAAGGATTTGTTT
64 GACTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTT
*
45627 TTACGAGCATCTAAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATG
129 TTACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATG
* * * *
45692 ATATTAGAAGTGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATAATATTTTTTCAGAGTAT
194 ATATTAGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTAT-ATATTTTTTCTGAGTAT
**
45757 TGTGGCAAAAAATTGAGAAAAAA-TTTTCTTGTCAGTTTTTAGCCGAAATCGTGTACTAACCATC
258 TGTGGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATC
45821 A
323 A
** *
45822 CGAATTTTGGCTAAAAACGCGTTCCCGAGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGA
1 CGGTTTTTGGCTAAAAACGCGTTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGA
* *
45887 CTCCGTGAAATATCTATATTCGTCTAACCAAATCTTAGCCACCTTAAATTTAAGGAATTTTTTTT
66 CTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGG-ATTTGTTTT
* * * *
45952 TACGTAGCATCCGAATCTTGTTCCGATTTAATTAGAAACTCATTCGGAAAAAAATTGGAAAATTG
130 TACG-AGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATG
* * *
46017 ATATTAAAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATA-TTTTTCTGAGTATT
194 ATATTAGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATT
* *
46081 GAGGCAAAAAATTGAGAAAAAACATTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCA
259 GTGGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCA
* * * * *
46146 CAGTTTTTGGCTAAAAACTCATTCGCGGGCCCCGGCTCAGCTTTGCATGATTTATGGCAGAAAGA
1 CGGTTTTTGGCTAAAAACGCGTTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGA
46211 CTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTT
66 CTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTT
46276 ACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGAT
131 ACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGAT
*
46341 ATTAGAAGCGTGAACATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
196 ATTAGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
* *
46406 GGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATTGTATACTAACCATCA
261 GGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCA
* * * *
46469 CGGTTTTTGGCTAAAAACGCATTCCCGGGCCCCGGCTCAGCTTTGCCTGATTTCTGGCAGAAACA
1 CGGTTTTTGGCTAAAAACGCGTTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGA
46534 CTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTT
66 CTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTT
*
46599 ACGAGCTTCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGAT
131 ACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGAT
*
46664 ATTAGAAGCGTGAAAATACCATCAATC-TTTTGGCCTTGAATTATATATTTTTTCTGAGTATTGT
196 ATTAGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
* * * * *
46728 GGCAAAAATTTGAGAAAAAACTTTTCGGGTCGGTATTTAGCTGAAATCGTGTACTAACTATCA
261 GGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCA
* * * * * * *
46791 CTGTTTTTGGCAAAAAAACTCATTCCCGGTCCCCGGCTCAGCTTTGCATGATTCTTGGCAGAAAC
1 CGGTTTTTGGC-TAAAAACGCGTTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAG
*
46856 ACTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTGAAATTTAAGGATTTGTTTT
65 ACTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTT
* * *
46921 TACGAGCATCTGAATTTTGTTCGGATTTAATTAGAAATTTATTCGGA
130 TACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGA
46968 TTCAGTTTTT
Statistics
Matches: 1611, Mismatches: 157, Indels: 44
0.89 0.09 0.02
Matches are distributed among these distances:
319 11 0.01
320 131 0.08
321 93 0.06
322 271 0.17
323 667 0.41
324 327 0.20
325 111 0.07
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (323 bp):
CGGTTTTTGGCTAAAAACGCGTTCCCGGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGA
CTCCGTGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTT
ACGAGCATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGAT
ATTAGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
GGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCA
Found at i:46248 original size:647 final size:642
Alignment explanation
Indices: 44925--46967 Score: 2870
Period size: 647 Copynumber: 3.2 Consensus size: 642
44915 AAAGACTATT
* * * * * * * *
44925 TGAAATATCTTTATTCATCGAATCAAATCTCAGCCATACTGAATATAAGGATTTGTTTTTTCGAG
1 TGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAAATTTAAGGATTTGTTTTTACGAG
* * * * *
44990 CATCTCAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-GAAAAATATGGAAAAACGATATTA
66 CATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAAT-TGGAAAAATGATATTA
* ** *
45054 GAAGCGTGAAAAGCCCGTCAAGATTTTTGGCGTGGAATTATATATTTTTTCTGAGTATTGTGGCA
130 GAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCA
** * *
45119 AAAAATTGAGAAAAAACTTTTCGGATCAGTTTTTATAACGAAATCGTGTACT-ATCATAACGGTT
195 AAAAATTGAGAAAAAACTTTTCGG-TCAGTTTTTA-GCCGAAATCGTGTACTAACCATCACGGTT
* *** ** * * *
45183 TTTGGCTATAAACGCGTT-CCGG-GAAGGCTCAATTTTGCATGTTTTTTAGC-GCAAAGACTCCT
258 TTTGGCTAAAAACGCGTTCCCGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAG-AAAGACTCCG
* * * * * ** * * *
45245 TGAAATACCTATATTCATCGAACCAAATGTCAGCCACATTGGATATAAGGATTTGTTTTCAGGAG
322 TGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAG
* *
45310 CATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATCT-GAAAAATGATATT
387 CATCTGAATCTTGTTCCGATTTAATTAGAAATTAATTCGG-AAAAAAAT-TGGAAAAATGATATT
* *
45374 AGAAGCGTGAAAAGACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATT-ATAG
450 AGAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGA-GG
* * * * * *
45438 CAAAAAAGTCAGGAAAAAAAAATTCGGGTCAGTTTTTAGCTGAAATCGTGTACGT---TTCACGG
514 CAAAAAATTGA-GAAAAAACATTTCGGGTCAGTTTTTAGCTGAAATCGTGTAC-TAACATCACAG
*** * *
45500 TTTTTGAGCTAAAAACGGGTTTCGGGGGCCCCGACTCAGCTTTGCATGATTTTAGGCAGAAAGAC
577 TTTTTG-GCTAAAAAC-TCATTCGCGGGCCCCGGCTCAGCTTTGCATGATTTT-GGCAGAAAGAC
45565 TCCG
639 TCCG
45569 TGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAAATTTAAGGATTTGTTTTTACGAG
1 TGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAAATTTAAGGATTTGTTTTTACGAG
*
45634 CATCTAAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAG
66 CATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAG
* *
45699 AAGTGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATAATATTTTTTCAGAGTATTGTGGCA
131 AAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTAT-ATATTTTTTCTGAGTATTGTGGCA
* **
45764 AAAAATTGAGAAAAAA-TTTTCTTGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGAATT
195 AAAAATTGAGAAAAAACTTTTC-GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTT
45828 TTGGCTAAAAACGCGTTCCCGAGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGT
259 TTGGCTAAAAACGCGTTCCCG-GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGT
* *
45893 GAAATATCTATATTCGTCTAACCAAATCTTAGCCACCTTAAATTTAAGGAATTTTTTTTTACGTA
323 GAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGG-ATTTGTTTTTACG-A
* * * *
45958 GCATCCGAATCTTGTTCCGATTTAATTAGAAACTCATTCGGAAAAAAATTGGAAAATTGATATTA
386 GCATCTGAATCTTGTTCCGATTTAATTAGAAATTAATTCGGAAAAAAATTGGAAAAATGATATTA
* * *
46023 AAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATA-TTTTTCTGAGTATTGAGGCA
451 GAAGCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGAGGCA
*
46087 AAAAATTGAGAAAAAACATTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTT
516 AAAAATTGAGAAAAAACATTTCGGGTCAGTTTTTAGCTGAAATCGTGTACTAA-CATCACAGTTT
46152 TTGGCTAAAAACTCATTCGCGGGCCCCGGCTCAGCTTTGCATGATTTATGGCAGAAAGACTCCG
580 TTGGCTAAAAACTCATTCGCGGGCCCCGGCTCAGCTTTGCATGATTT-TGGCAGAAAGACTCCG
* *
46216 TGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAG
1 TGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAAATTTAAGGATTTGTTTTTACGAG
46281 CATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAG
66 CATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAG
* * *
46346 AAGCGTGAACATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAA
131 AAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAA
* *
46411 AAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATTGTATACTAACCATCACGGTTTT
196 AAAATTGAGAAAAAACTTTTC-GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT
* * * *
46476 TGGCTAAAAACGCATTCCCGGGCCCCGGCTCAGCTTTGCCTGATTTCTGGCAGAAACACTCCGTG
260 TGGCTAAAAACGCGTTCCC-GGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTG
*
46541 AAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCT
324 AAATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCA
*
46606 TCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAA
389 TCTGAATCTTGTTCCGATTTAATTAGAAATTAATTCGGAAAAAAATTGGAAAAATGATATTAGAA
* *
46671 GCGTGAAAATACCATCAATC-TTTTGGCCTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAA
454 GCGTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGAGGCAAAA
* * * * *
46735 ATTTGAGAAAAAACTTTTCGGGTCGGTATTTAGCTGAAATCGTGTACTAACTATCACTGTTTTTG
519 AATTGAGAAAAAACATTTCGGGTCAGTTTTTAGCTGAAATCGTGTACTAAC-ATCACAGTTTTTG
* * * *
46800 GCAAAAAAACTCATTCCCGGTCCCCGGCTCAGCTTTGCATGATTCTTGGCAGAAACACTCCG
583 GC-TAAAAACTCATTCGCGGGCCCCGGCTCAGCTTTGCATGATT-TTGGCAGAAAGACTCCG
* * *
46862 TGAAATATCTATATTCGTCTAACCAAATCTCAGCCACCTGAAATTTAAGGATTTGTTTTTACGAG
1 TGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAAATTTAAGGATTTGTTTTTACGAG
* * *
46927 CATCTGAATTTTGTTCGGATTTAATTAGAAATTTATTCGGA
66 CATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGA
46968 TTCAGTTTTT
Statistics
Matches: 1262, Mismatches: 114, Indels: 44
0.89 0.08 0.03
Matches are distributed among these distances:
643 14 0.01
644 205 0.16
645 212 0.17
646 245 0.19
647 454 0.36
648 84 0.07
649 48 0.04
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (642 bp):
TGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTAAATTTAAGGATTTGTTTTTACGAG
CATCTGAATCTTGTTCCGATTTAATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAG
AAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAA
AAAATTGAGAAAAAACTTTTCGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
GGCTAAAAACGCGTTCCCGGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAA
ATATCTATATTCGTCTAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATC
TGAATCTTGTTCCGATTTAATTAGAAATTAATTCGGAAAAAAATTGGAAAAATGATATTAGAAGC
GTGAAAATACCATCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGAGGCAAAAAA
TTGAGAAAAAACATTTCGGGTCAGTTTTTAGCTGAAATCGTGTACTAACATCACAGTTTTTGGCT
AAAAACTCATTCGCGGGCCCCGGCTCAGCTTTGCATGATTTTGGCAGAAAGACTCCG
Found at i:47128 original size:211 final size:212
Alignment explanation
Indices: 46763--47178 Score: 701
Period size: 211 Copynumber: 2.0 Consensus size: 212
46753 CGGGTCGGTA
* * *
46763 TTTAGCTGAAATCGTGTACTAACTATCACTGTTTTTGGCAAAAAAACTCATTCCCGGTCCCCGGC
1 TTTAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGCAAAAAAACGCATTCCCGGGCCCCGGC
*
46828 TCAGCTTTGCATGATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAATCTC
66 TCAGCTTTGCATAATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAATCTC
*
46893 AGCCACCTGAAATTTAAGGATTTGTTTTTACGAGCATCTGAAT-TTTGTTCGGATTTAATTAGAA
131 AGCCACCTGAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTT-TTCCGATTTAATTAGAA
*
46957 ATTTATTCGGATTCAGTT
195 ATTGATTCGGATTCAGTT
*
46975 TTTAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGC-TAAAAACGCATTCCCGGGCCCCGGC
1 TTTAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGCAAAAAAACGCATTCCCGGGCCCCGGC
* * * *
47039 TCAGCTTTGCATAATTTTTGGCAGAAACATTCTGTGGAATATCTATATTCGTCTAACCAAATCTC
66 TCAGCTTTGCATAATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAATCTC
*
47104 AGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTCCGATTTAATTAGAAA
131 AGCCACCTGAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTCCGATTTAATTAGAAA
47169 TTGATTCGGA
196 TTGATTCGGA
47179 AAAAAAATTG
Statistics
Matches: 191, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
211 150 0.79
212 41 0.21
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (212 bp):
TTTAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGCAAAAAAACGCATTCCCGGGCCCCGGC
TCAGCTTTGCATAATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAATCTC
AGCCACCTGAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTCCGATTTAATTAGAAA
TTGATTCGGATTCAGTT
Found at i:47771 original size:858 final size:857
Alignment explanation
Indices: 46112--47822 Score: 2913
Period size: 858 Copynumber: 2.0 Consensus size: 857
46102 ACATTTCGGG
* *
46112 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACTCATTCGCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCATTCCCGGGCC
* *
46177 CCGGCTCAGCTTTGCATGATTTATGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATAATTTATGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAA
46242 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
*
46307 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAACATACCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
*
46372 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGGTC
261 TGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGGTC
* ***
46437 AGTTTTTAGCCGAAATTGTATACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCCCC
326 AGTTTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCAAACCCC
* * * *
46502 GGCTCAGCTTTGCCTGATTTCTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAAT
391 GGCACAGCGTTGCCTGATTTCTAGCAGAAACACTCCGGGAAATATCTATATTCGTCTAACCAAAT
* * *
46567 CTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCTTCTGAATCTTGTTCCGATTTAATTAG
456 CTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCAAATTAATTAG
*
46632 AAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTTGG
521 AAATTGATTCGGAAAAAAATTGGAAAAATGATAGTAGAAGCGTGAAAATACCATCAATCTTTTGG
* * * **
46697 CCTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAATTTGAGAAAAAACTTTTCGGGTCGGT
586 CCTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACATTTCGGATAAGT
* * * *
46762 ATTTAGCTGAAATCGTGTACTAACTATCACTGTTTTTGGCAAAAAAACTCATTCCCGGTCCCCGG
651 ATTTAGCCGAAATCGTGTAATAACCATCACTGTTTTTGGCAAAAAAACTCATTCCCGGGCCCCGG
46827 CTCAGCTTTGCATGATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAATCT
716 CTCAGCTTTGCATGATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAATCT
* * *
46892 CAGCCACCTGAAATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTCGGATTTAATTAGAA
781 CAGCCACCTGAAATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATTAGAA
*
46957 ATTTATTCGGAT
846 ATTGATTCGGAT
* *
46969 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACGCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * * *
47034 CCGGCTCAGCTTTGCATAATTTTTGGCAGAAACATTCTGTGGAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATAATTTATGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAA
*
47099 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
47164 AGAAATTGATTCGGAAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTT
196 AGAAATTGATTCGG-AAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTT
47229 TTGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGGT
260 TTGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGGT
*
47294 CAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCAAACCC
325 CAGTTTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCAAACCC
* *
47359 CGGCACAGCGTTGCCTGATTTTTAGCAGAAACACTCTGGGAAATATCTATATTCGTCTAACCAAA
390 CGGCACAGCGTTGCCTGATTTCTAGCAGAAACACTCCGGGAAATATCTATATTCGTCTAACCAAA
*
47424 TCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTCCAAATTAATTA
455 TCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCAAATTAATTA
*
47489 GAAATTGATTCGGAAAAAAATTGGAAAAATGATAGTAGAAGCGTGAAAATATCATCAATCTTTTT
520 GAAATTGATTCGGAAAAAAATTGGAAAAATGATAGTAGAAGCGTGAAAATACCATCAATC-TTTT
* * * *
47554 GGCGTTGAATTATATCTTTTTTTTTAGTATTGTGGCAAAAAATTGAGAAAAAACATTTCGGATAA
584 GGCCTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACATTTCGGATAA
* *
47619 GTTTTTAGCCGAAATCGTGTAATAACCATCAC-GATTTTTGGC-TAAAAACTCATTCCCGGGCCC
649 GTATTTAGCCGAAATCGTGTAATAACCATCACTG-TTTTTGGCAAAAAAACTCATTCCCGGGCCC
* *
47682 CGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAAA
713 CGGCTCAGCTTTGCATGATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAA
*
47747 TCTCAGCCACCTTAAATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATTA
778 TCTCAGCCACCTGAAATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATTA
47812 GAAATTGATTC
843 GAAATTGATTC
47823 CGATAAAAAT
Statistics
Matches: 799, Mismatches: 52, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
857 198 0.25
858 505 0.63
859 96 0.12
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (857 bp):
TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCATTCCCGGGCC
CCGGCTCAGCTTTGCATAATTTATGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAA
ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
TGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGGTC
AGTTTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCAAACCCC
GGCACAGCGTTGCCTGATTTCTAGCAGAAACACTCCGGGAAATATCTATATTCGTCTAACCAAAT
CTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCAAATTAATTAG
AAATTGATTCGGAAAAAAATTGGAAAAATGATAGTAGAAGCGTGAAAATACCATCAATCTTTTGG
CCTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACATTTCGGATAAGT
ATTTAGCCGAAATCGTGTAATAACCATCACTGTTTTTGGCAAAAAAACTCATTCCCGGGCCCCGG
CTCAGCTTTGCATGATTCTTGGCAGAAACACTCCGTGAAATATCTATATTCGTCTAACCAAATCT
CAGCCACCTGAAATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATTAGAA
ATTGATTCGGAT
Found at i:50097 original size:322 final size:323
Alignment explanation
Indices: 46969--51131 Score: 6358
Period size: 323 Copynumber: 13.0 Consensus size: 323
46959 TTATTCGGAT
* *
46969 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACGCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * * * *
47034 CCGGCTCAGCTTTGCATAATTTTTGGCAGAAACATTCTGTGGAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
*
47099 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
47164 AGAAATTGATTCGGAAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTT
196 AGAAATTGATTCGG-AAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTT
*
47229 TTGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
260 TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
***
47293 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCAAACC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * * * * * *
47358 CCGGCACAGCGTTGCCTGATTTTTAGCAGAAACACTCTGGGAAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
* * *
47423 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTCCAAATTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
* *
47488 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATAGTAGAAGCGTGAAAATATCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
* * * * *
47553 TGGCGTTGAATTATATCTTTTTTTTTAGTATTGTGGCAAAAAATTGAGAAAAAACATTTCGGA
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
* * * *
47616 TAAGTTTTTAGCCGAAATCGTGTAATAACCATCACGATTTTTGGCTAAAAACTCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
47681 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
*
47746 ATCTCAGCCACCTTAAATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
* * * *
47811 AGAAATTGATTCCGATAAAAATTGGAAATATGATATTAGAAACGTGAAAATACCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
* *
47876 TGGCGATGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
* ***
47939 TCAGTTTTTAGCCGAAATCGTGTACAAACCATCACGGTTTTTGGCTAAAAACGCATTCCCAAACC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * * *
48004 CCGGCTCAGCGTTGCCTGATTTTTAGCAGAAACACTCCAG-GAAATATCTATATTCGTCTAACCA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCC-GTGAAATATCTATATTCGTCTAACCA
48068 AATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAAT
130 AATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAAT
* *
48133 TAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAATTACCATCAATC-TC
195 TAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTT
* * *
48197 TTGGCGTTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGAAAATACATTTCGGG
260 TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
*
48261 TCAGTTTTTAGCCGAAATCGTG-----A-CATCACGGTTTATGGCTAAAAACGCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * *
48320 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAACACTCTGTGGAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
48385 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
**
48450 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATAAGAGAAGCGTGAAAATACCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
* *
48515 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTTGAGAAAAAA-TTTCCCGG
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAA-TTGAGAAAAAACTTTTCGGG
* * *
48578 TCAATTTTTAGCTGAAATCGTG---------T-A-----TTTGGCTAAAAACTCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
*
48628 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATTTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
* *
48693 ACCTCAGCCACCATAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
* *
48758 AGAAATTGATTCCGATAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
* * *
48823 TGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACATTTCGGA
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
48886 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
*
48951 CCGGCTCAGCTTTGCATAATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
*
49016 ACCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
* *
49081 AGAAATTGATTCCGATAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
*
49146 TGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
49209 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * * * *
49274 CCGGATCAGCTTTGCCTGATTTCTGGCAGAAACACTCTGTGAAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
49339 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
49404 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
* *
49469 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGTAAAAAATTAGAGAAAAAACTTTTCAGG
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATT-GAGAAAAAACTTTTCGGG
* * *
49533 TCAGTTATTAGCCGAAATCGT-TACTAACCATAACTGTTTTTGGCTAAAAACGCATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * *
49597 CCGGCTCAGTTTTGAATGATTTTTGGAAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
*
49662 ATCTCAGCCACCTTAAATTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
*
49727 AGAAATTGATTCCGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
* * *
49792 TGCCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAATTTGAGAAAAAACTTTTCAGG
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
* * * *
49855 TTAGTTTTTAGCCGAAATCGTGTACTAA-TATCACGATTTTTGGCTAAAAACGCATTCTCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* *
49919 CCGGCTCAGTTTTGCATGATTTTAT-GCTGAAAGACTCCGTGAAATATCTATATTCGTCTAACCA
66 CCGGCTCAGCTTTGCATGATTTT-TGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCA
*
49983 AATCTCA-CACACCTTAAATTTAAGGATTTGTTTTTACGAGCATCCGAATCTTGTTCCGATTTAA
130 AATCTCAGC-CACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAA
* * *
50047 TTAGAAATTGATTCGGAAAAAAAATTGG-AAAAT-AGTATTAGAATCGTGAAAATCCCGTCAATC
194 TTAGAAATTGATTCGG-AAAAAAATTGGAAAAATGA-TATTAGAAGCGTGAAAATACCATCAATC
* **
50110 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAATTTGAGAAAAAACTCATCG
257 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCG
50175 GG
322 GG
*
50177 TCAGTTTTTAGCCGAAA-----T-CT---CATCACGGTTTTTGGCTAAAAACGGATTCCCGGGCC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
* * *
50233 CCGACTCAGCTTTGCATGATTTTTGGCAGAAAAACTCCGTGAAATATCTATATTCGTCTAAGCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
*
50298 ATCTCAGCCACCTTAAATTTAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
*
50363 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATGAATCTTTT
196 AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
* *
50428 TGGCGTTGAATTATATGTTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTTGGG
261 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
*
50491 TCAGTTTTTAGCCGAAATCGTG---T-ACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGTC
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
*
50552 CCGGCTCAGCTTTGTATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
66 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
* *
50617 ATCTCAGACACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGATTCTTGTTCCGATTTAATT
131 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
* * *
50682 AGAATTTGATTCGGAAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTTT
196 AGAAATTGATTCGG-AAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTT
* * ** *
50747 TTGGCATTGAATTATAT-TTTTTTCT-TGTATTGTGGCAAAAAAAGTCTGA-AAAAAA--AATCA
260 TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAA-T-TGAGAAAAAACTTTTCG
*
50807 TG
322 GG
* * ***
50809 TCAGTTTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGTGCTAAAAGCGCATTTTGGGGG
1 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG-GCTAAAAACGCA-TTCCCGGG
** * * * * * * * *
50874 CCCCTTCTCAG-TTTGCTTGATTTATGGTAGAAAGACTCCTTGAAATATTTACATTCATCGAACC
64 CCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACC
* * * * *
50938 AAAT-TCCAGCCACATTAGATATAAGGATTTGTTTTTAGGAGCATCTGAATCTTGTTTCGATTTA
129 AAATCT-CAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTA
* * * * ** *
51002 ATTAGAAATTAATTTGGAATAAAAATTTGAAAAACGATATTAGAAGTTTGAAAA-ACCCTTCAAT
193 ATTAGAAATTGATTCGGAA-AAAAATTGGAAAAATGATATTAGAAGCGTGAAAATA-CCATCAAT
* * * * * *
51066 TTTTTTTGCGTTGAATTATATATTTTTTCTGATTATTGTGACAAAGAATTGAGAAAAAAATTTTC
256 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTC
51131 G
321 G
51132 AATCATTTTT
Statistics
Matches: 3531, Mismatches: 253, Indels: 109
0.91 0.06 0.03
Matches are distributed among these distances:
307 11 0.00
308 275 0.08
313 13 0.00
314 274 0.08
315 3 0.00
316 215 0.06
317 73 0.02
318 44 0.01
319 184 0.05
320 70 0.02
321 6 0.00
322 415 0.12
323 1680 0.48
324 258 0.07
325 10 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (323 bp):
TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCCGGGCC
CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCTAACCAA
ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTCCGATTTAATT
AGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATACCATCAATCTTTT
TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
Found at i:51179 original size:2 final size:2
Alignment explanation
Indices: 51172--51217 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
51162 GTTTACTCTT
51172 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51214 TA TA
1 TA TA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.