Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020871.1 Corchorus olitorius cultivar O-4 contig20904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83058

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4908--4958
22
2.2
22
82
6
57
23
27
15
33
1.95
7818--7869
26
2.0
26
100
0
104
23
19
11
46
1.82
8493--8520
14
2.0
14
100
0
56
21
7
28
42
1.79
16031--16055
10
2.5
10
100
0
50
80
8
12
0
0.92
16813--16870
19
2.9
20
82
5
73
29
20
12
37
1.89
25031--25056
2
13.0
2
100
0
52
50
0
0
50
1.00
25400--25437
20
2.0
20
89
5
60
26
0
18
55
1.43
28363--28387
13
1.9
13
100
0
50
24
0
12
64
1.27
31174--31231
5
12.2
5
80
10
59
3
17
0
79
0.87
31174--31231
25
2.5
23
81
13
73
3
17
0
79
0.87
35171--35330
60
2.7
59
85
6
216
26
15
18
39
1.90
40240--40327
31
2.8
32
82
3
106
29
28
27
14
1.95
57228--57252
12
2.1
12
100
0
50
16
32
12
40
1.84
68251--68314
33
1.9
33
93
0
110
39
21
25
14
1.91
74813--74910
31
3.2
31
94
2
162
32
6
18
42
1.75
81213--81253
7
5.7
7
97
2
73
0
0
41
58
0.98
82855--82888
3
11.0
3
87
6
50
32
2
0
64
1.08
82853--82888
13
2.8
13
91
4
56
33
2
0
63
1.08

Tables:   1

The End!