Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020872.1 Corchorus olitorius cultivar O-4 contig20905, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121002

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3905--3934
2
15.0
2
92
0
51
46
0
3
50
1.18
3969--4281
160
2.0
160
96
1
574
42
9
10
37
1.72
5459--5599
76
1.9
76
86
5
205
33
12
19
34
1.90
9201--9297
48
2.0
48
95
0
176
40
22
25
11
1.87
15353--15758
40
10.2
39
93
5
638
34
5
25
34
1.79
15353--15758
79
5.1
79
95
2
681
34
5
25
34
1.79
15690--15754
20
3.2
20
65
8
60
38
6
23
32
1.79
17150--17186
18
2.1
18
100
0
74
27
5
37
29
1.79
18904--19072
80
2.1
82
83
3
207
30
30
26
12
1.93
38892--38950
19
3.0
20
80
7
66
30
16
11
40
1.85
42125--42170
22
2.0
22
83
8
56
45
13
6
34
1.69
54024--54050
3
9.0
3
100
0
54
0
33
0
66
0.92
64204--64228
11
2.3
11
100
0
50
32
48
12
8
1.69
69843--69884
20
2.3
19
80
12
52
14
9
4
71
1.28
83058--83164
54
1.9
56
84
3
146
33
12
3
50
1.57
87862--87953
33
2.8
33
90
3
141
39
20
17
22
1.93
87943--88000
24
2.4
24
91
5
91
41
8
24
25
1.83
87963--88011
24
2.0
24
88
0
71
42
12
24
20
1.86
88114--88162
24
2.0
24
96
0
89
20
28
14
36
1.92
88930--88991
31
2.0
31
100
0
124
25
6
19
48
1.72
88931--89005
31
2.6
29
87
10
93
28
5
20
46
1.72
99269--99357
45
2.0
44
86
8
126
46
7
28
17
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116653--116687
18
1.9
18
88
11
54
31
20
5
42
1.75

Tables:   1

The End!