Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020873.1 Corchorus olitorius cultivar O-4 contig20906, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117163

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7047--7185
68
2.0
68
100
0
278
25
15
38
20
1.92
16084--16163
40
2.0
40
95
0
142
40
13
0
46
1.44
16568--16608
21
2.0
21
85
9
57
63
0
7
29
1.21
24398--24444
22
2.1
22
100
0
94
38
8
23
29
1.84
25642--25726
42
2.0
42
81
0
98
20
22
24
32
1.97
49111--49166
15
3.7
15
75
17
53
3
7
64
25
1.35
49131--49172
12
3.5
12
86
0
57
7
2
69
21
1.25
52644--52685
12
3.5
12
83
6
50
23
0
66
9
1.21
52657--52688
9
3.6
9
91
0
55
21
0
68
9
1.17
52534--52805
123
2.2
122
85
1
366
19
4
58
18
1.55
52768--52808
15
2.7
15
84
0
55
19
0
73
7
1.07
69559--69588
2
15.0
2
100
0
60
50
0
0
50
1.00
79752--79818
28
2.4
28
100
0
134
29
20
5
43
1.76
87797--87845
24
2.1
23
85
7
64
34
20
18
26
1.95
90103--90170
33
2.1
33
100
0
136
35
11
5
47
1.65

Tables:   1

The End!