Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020874.1 Corchorus olitorius cultivar O-4 contig20907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2882
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--34 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35 GGCACTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1740 original size:646 final size:644
Alignment explanation
Indices: 446--2878 Score: 3449
Period size: 646 Copynumber: 3.8 Consensus size: 644
436 TCAAATATGC
* * *
446 CCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGAGTCCGTGAAAAATCTATATTCGTCGAACCA
1 CCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAAAATCTATATTCGTCGAACCA
* *
511 AATCTCAGCCACCTTAAATTTAAGGATTTGTCTTTACGAGCATCTAAATCTTCTTCCGATTTAAT
66 AATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAAT
* *
576 TGGAAATTGATTC-GAGAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCGGTCAATCTT
131 TAGAAATTGATTCGGA-AAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTT
* * **
640 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAATATTGAGAAAAAGTTTTTCGGG
195 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGATAAAAAACTTTTCGGG
*
705 AT-AGTTTTTAGCCGAAATC--G---------T----G--TTTGGCTAAAAACGCGTTCCTGAGC
260 -TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCGAGC
* * * *
752 CCCGACTCAGCTTTGCATGATTTTT-GCAGAAAGATTCTGTGTAATATCTATATTCGTCGAACCA
324 CCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCGAACCA
* * *
816 AATCTCATCCACCATAAATTTAAGGATTTGTTTTTATGAGCATCTGAATCTTCTTCCGATTTAAT
389 AATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAAT
* * *
881 TAGAAATTCATTCGGAAAAAAAATGGAAAAATGATATTAGAAGCGTGAAATTCCCATCAATCTTT
454 TAGAAATTCATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTTT
946 TTGGCGTTGAATTATATATTTTTTCCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCGGG
519 TTGGCGTTGAATTATATATTTTTT-CTGAGTATTGTGGC-AAAAATTGAGAAAAAACTTTTCGGG
*** * *
1011 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAATTTTTGGCTAAAAACGCGTTCCGGGG
582 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCAGGTTTTTTGGCTAAAAACGCGTTCCCGGT
* * *
1074 CCCTGACTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCAAACC
1 CCC-GGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAAAATCTATATTCGTCGAACC
* * * *
1139 AAATCTCAGCAACCTTAAATTTAAGGATTTGTTTTTATGAACATCTGAATCTTGTTCCGATTTAA
65 AAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAA
* * *
1204 ATAGAAATTGATTCTGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAATTCCCGTCAATCTT
130 TTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTT
* *
1269 TTTGGAGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTG-TTAAAAACTTTTCGGG
195 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGATAAAAAACTTTTCGGG
* * * * *
1333 TCAGTTTTTAGCCGAATTCGTATACTAACCATCACAATTTTTGGCTAAAAACGCGTTCCTGGGCC
260 TCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCGAGCC
* * *
1398 CCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACCCCGTGAAATATCTATATTCGTCTAACCAA
325 CCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCGAACCAA
* * *
1463 ACCTCAGCCTCCTTAAATTTATGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAATT
390 ATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAATT
* * *
1528 AGAAATTGATTCGGGAAAAAATTAGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTTTT
455 AGAAATTCATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTTTT
*
1593 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAATATTGAGAAAAAACTTTTCGGGAC
520 TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAA-ATTGAGAAAAAACTTTTCGGGTC
1658 AGTTTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTTGGCTAAAAACGCGTTCCCGAGT
584 AGTTTTTAGCCGAAATCGTGTACTAACCATCA-GGTTTTTTGGCTAAAAACGCGTTCCCG-GT
* *
1721 CCCGGCTCAGCTCTGCATGATTTTTGGCAGAAAGAGC-CCGTGAAATATCTATATTCGTCGAACC
1 CCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGA-CTCCGTGAAAAATCTATATTCGTCGAACC
* *
1785 AAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTTCGATATAA
65 AAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAA
* * *
1850 TTAGAAATTCATTCGGAAAAAATTTGGAAAAATGATATTAGAAGCGTGAAATTCCCGTCAATCTT
130 TTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTT
* *
1915 TTTGGCGTTGAATTATGT-TTTTTTCCCATGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTC
195 TTTGGCGTTGAATTATATATTTTTT--C-TGAGTATTGTGGCAAAAAATTGATAAAAAACTTTTC
* * * *
1979 GGGTAAGTTTTTCGCCGAAATCGTGTACTAACCATCACAGTTTTTGACTAAAAACGCGTTCCCGG
257 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCGA
* * * * * * * *
2044 GACCCGGCTCAGTTTTGCATGAATTTTGGTAGAAAGGCTCTGTGAAATATCTATATTCATCTAAC
322 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCGAAC
* * ** *
2109 CAAATCTCAGCCACATTAAATTTAAGAATTCCTTTTTACGAGCATCTGAATCTTGTTCCGATTTA
387 CAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTA
* * *
2174 ATTAGAAATTGATTCCGAAAAAAAATTGAAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
452 ATTAGAAATTCATT-CGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
* * * *
2239 ATTTTGACTTTGAATTATATATTTTTTCTGAGTATTGTGGCATGAAATTGAGAAAAAACTTTTCG
516 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCA-AAAATTGAGAAAAAACTTTTCG
* * **
2304 TGTCAGTTTTTAACTTAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTCCCGG
580 GGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCA-GGTTTTTTGGCTAAAAACGCGTTCCCGG
2369 T
644 T
* * * * **
2370 CCCCGGCTCAGCTTTGAATGATTTTTGGCAGAAAGAGTCCGTGAAAAATCTATCTTCGTCTAAGT
1 -CCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAAAATCTATATTCGTCGAACC
* *
2435 AAATATCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCTGATTTAA
65 AAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAA
*
2500 TTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCAT
130 TTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTT
* * *
2565 TTTGGCGTTGGATGATATATTTTTTCTGAGTATTGTGGCAAAATATTGATAAAAAACTTTTC-GG
195 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGATAAAAAACTTTTCGGG
** *
2629 TACAGTTTTTAGTTGAAATCGTGTACTAACAATCACAGTTTTTTTTTGTGGCTAAAAACGCGTTC
260 T-CAGTTTTTAGCCGAAATCGTGTACTAACCATCACAG-----TTTT-TGGCTAAAAACGCGTTC
* ** * *
2694 CCAAG-CCCGGCTCAGCTTTGCATGATTTTTAACAGAAAGAGTCCGTGAAATATCTATATTAGTC
318 CCGAGCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTC
* *
2758 GAACCAAATCTCAACCACCTTAAACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGA
383 GAACCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGA
**
2823 TTTAATTAGAAATTCATTCGGAGTAAAATTGGAAAAATGATATTAGAAGCGTGAAA
448 TTTAATTAGAAATTCATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAA
2879 TTTC
Statistics
Matches: 1610, Mismatches: 154, Indels: 58
0.88 0.08 0.03
Matches are distributed among these distances:
627 1 0.00
628 31 0.02
629 220 0.14
630 2 0.00
639 1 0.00
644 4 0.00
645 121 0.08
646 391 0.24
647 9 0.01
648 87 0.05
649 201 0.12
650 354 0.22
651 8 0.00
652 34 0.02
653 127 0.08
654 19 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (644 bp):
CCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAAAATCTATATTCGTCGAACCA
AATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAAT
TAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTTT
TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGATAAAAAACTTTTCGGGT
CAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCGAGCCC
CGGCTCAGCTTTGCATGATTTTTGGCAGAAAGACTCCGTGAAATATCTATATTCGTCGAACCAAA
TCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTTAATTA
GAAATTCATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATCTTTTT
GGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAATTGAGAAAAAACTTTTCGGGTCAG
TTTTTAGCCGAAATCGTGTACTAACCATCAGGTTTTTTGGCTAAAAACGCGTTCCCGGT
Found at i:2159 original size:325 final size:324
Alignment explanation
Indices: 444--2878 Score: 3424
Period size: 324 Copynumber: 7.6 Consensus size: 324
434 GTTCAAATAT
* * *
444 GCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGAG-TCCGTGAAAAATCTATATTCGTCGAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
* *
508 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTCTTTACGAGCATCTAAATCTTCTTCCGATTT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
* *
573 AATTGGAAATTGATTC-GAGAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCGGTCAAT
131 AATTAGAAATTGATTCGGA-AAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAAT
* **
637 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAATATTGAGAAAAAGTTTTTC
195 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTC
*
702 GGG-ATAGTTTTTAGCCGAAATC--G---------T----G--TTTGGCTAAAAACGCGTTCCTG
260 GGGTA-AGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCG
*
749 A
324 G
* * * *
750 GCCCCGACTCAGCTTTGCATGATTTTT-GCAGAAAGA-TTCTGTGTAATATCTATATTCGTCGAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
* * *
813 CCAAATCTCATCCACCATAAATTTAAGGATTTGTTTTTATGAGCATCTGAATCTTCTTCCGATTT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
* * * *
878 AATTAGAAATTCATTCGGAAAAAAAATGGAAAAATGATATTAGAAGCGTGAAATTCCCATCAATC
131 AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
943 TTTTTGGCGTTGAATTATATATTTTTTCCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTC
196 TTTTTGGCGTTGAATTATATATTTTTT-CTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTC
* * *
1008 GGGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAATTTTTGGCTAAAAACGCGTTCCGGG
260 GGGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCGG
* * *
1073 GCCCTGACTCAGCTTTGCATGATTTTTGGCAGAAAGA-CTCCGTGAAATATCTATATTCGTCAAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
* * * *
1137 CCAAATCTCAGCAACCTTAAATTTAAGGATTTGTTTTTATGAACATCTGAATCTTGTTCCGATTT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
* * *
1202 AAATAGAAATTGATTCTGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAATTCCCGTCAATC
131 AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
* **
1267 TTTTTGGAGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTG-TTAAAAACTTTTCG
196 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCG
* * * * *
1331 GGTCAGTTTTTAGCCGAATTCGTATACTAACCATCACAATTTTTGGCTAAAAACGCGTTCCTGG
261 GGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCGG
* * *
1395 GCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAAAGA-CCCCGTGAAATATCTATATTCGTCTAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
* * *
1459 CCAAACCTCAGCCTCCTTAAATTTATGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
* *
1524 AATTAGAAATTGATTCGGGAAAAAATTAGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
131 AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
*
1589 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAATATTGAGAAAAAACTTTTCG
196 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCG
**
1654 GG-ACAGTTTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTTGGCTAAAAACGCGTTCCCG
261 GGTA-AGTTTTTAGCCGAAATCGTGTACTAACCATCACAG-TTTTTGGCTAAAAACGCGTTCCCG
*
1718 A
324 G
* *
1719 GTCCCGGCTCAGCTCTGCATGATTTTTGGCAGAAAGAGC-CCGTGAAATATCTATATTCGTCGAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
* *
1783 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTTCGATAT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
* * *
1848 AATTAGAAATTCATTCGGAAAAAATTTGGAAAAATGATATTAGAAGCGTGAAATTCCCGTCAATC
131 AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
*
1913 TTTTTGGCGTTGAATTATGT-TTTTTTCCCATGAGTATTGTGGCAAAAAATTGAGAAAAAACTTT
196 TTTTTGGCGTTGAATTATATATTTTTT--C-TGAGTATTGTGGCAAAAAATTGAGAAAAAACTTT
* *
1977 TCGGGTAAGTTTTTCGCCGAAATCGTGTACTAACCATCACAGTTTTTGACTAAAAACGCGTTCCC
258 TCGGGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCC
2042 GG
323 GG
* * * * * * *
2044 GACCCGGCTCAGTTTTGCATGAATTTTGGTAGAAAG-GCTCTGTGAAATATCTATATTCATCTAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
* * ** *
2108 CCAAATCTCAGCCACATTAAATTTAAGAATTCCTTTTTACGAGCATCTGAATCTTGTTCCGATTT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
* *
2173 AATTAGAAATTGATTCCGAAAAAAAATTGAAAAAATGATATTAGAAGCGTGAAAATCCCGTCAAT
131 AATTAGAAATTGATT-CGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAAT
* * * **
2238 CATTTTGACTTTGAATTATATATTTTTTCTGAGTATTGTGGCATGAAATTGAGAAAAAACTTTTC
195 CTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTC
* * * ** *
2303 GTGTCAGTTTTTAACTTAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTCCCG
260 GGGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACAG-TTTTTGGCTAAAAACGCGTTCCCG
2368 G
324 G
* * * * *
2369 TCCCCGGCTCAGCTTTGAATGATTTTTGGCAGAAAGAG-TCCGTGAAAAATCTATCTTCGTCTAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
** * *
2433 GTAAATATCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCTGATTT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
2498 AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
131 AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
* * * * *
2563 ATTTTGGCGTTGGATGATATATTTTTTCTGAGTATTGTGGCAAAATATTGATAAAAAACTTTTC-
196 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCG
** *
2627 GGTACAGTTTTTAGTTGAAATCGTGTACTAACAATCACAGTTTTTTTTTGTGGCTAAAAACGCGT
261 GGTA-AGTTTTTAGCCGAAATCGTGTACTAACCATCACAG-----TTTT-TGGCTAAAAACGCGT
**
2692 TCCCAA
319 TCCCGG
** *
2698 G-CCCGGCTCAGCTTTGCATGATTTTTAACAGAAAGAG-TCCGTGAAATATCTATATTAGTCGAA
1 GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
* *
2761 CCAAATCTCAACCACCTTAAACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
66 CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
* **
2826 AATTAGAAATTCATTCGGAGTAAAATTGGAAAAATGATATTAGAAGCGTGAAA
131 AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAA
2879 TTTC
Statistics
Matches: 1906, Mismatches: 182, Indels: 60
0.89 0.08 0.03
Matches are distributed among these distances:
305 175 0.09
306 82 0.04
308 1 0.00
317 1 0.00
322 298 0.16
323 122 0.06
324 601 0.32
325 298 0.16
326 133 0.07
327 7 0.00
328 169 0.09
329 19 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (324 bp):
GCCCCGGCTCAGCTTTGCATGATTTTTGGCAGAAAGAGCTCCGTGAAATATCTATATTCGTCGAA
CCAAATCTCAGCCACCTTAAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTCTTCCGATTT
AATTAGAAATTGATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTGAAAATCCCGTCAATC
TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAACTTTTCG
GGTAAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCCGG
Done.