genome.fa.s20876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020876.1 Corchorus olitorius cultivar O-4 contig20909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152802

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--1564	318	4.8	321	88	3	2221	31	16	17	34	1.92
3370--3908	264	2.0	268	86	5	743	33	14	13	38	1.86
12668--12718	25	2.0	25	92	0	84	17	13	15	52	1.74
22842--22866	12	2.1	12	100	0	50	24	32	16	28	1.96
28825--28905	3	27.0	3	100	0	162	33	0	0	66	0.92
29985--30354	106	3.7	102	81	10	342	30	14	18	37	1.90
30077--30469	200	1.9	205	88	5	600	29	15	18	36	1.92
30183--30355	94	1.8	94	98	0	337	27	13	19	39	1.89
30352--30390	19	2.1	19	100	0	78	43	25	10	20	1.83
30418--30562	77	1.9	77	97	0	272	26	15	20	37	1.92
31190--31226	13	2.8	13	100	0	74	54	16	13	16	1.72
36065--36341	102	2.7	101	86	3	358	19	25	18	35	1.95
39278--39328	24	2.1	24	89	7	77	33	23	25	17	1.96
45807--45870	32	2.0	32	90	3	103	43	25	3	28	1.69
46219--46254	3	11.7	3	94	5	63	0	33	0	66	0.92
47949--47986	19	2.0	19	94	0	67	36	7	21	34	1.82
48656--48682	13	2.1	13	100	0	54	22	22	22	33	1.97
62001--62032	13	2.5	13	89	0	55	25	43	0	31	1.55
65395--65421	2	13.5	2	100	0	54	0	48	0	51	1.00
71312--71345	1	34.0	1	87	0	50	0	0	5	94	0.32
86614--86641	3	9.3	3	100	0	56	67	0	0	32	0.91
94346--94408	28	2.3	27	81	10	65	73	3	20	3	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106874--106917	6	7.3	6	97	0	79	36	31	15	15	1.90
109251--109294	19	2.3	19	96	0	79	18	29	15	36	1.92
109353--109407	21	2.8	20	78	15	62	32	16	10	40	1.83
111388--111422	6	5.8	6	89	0	52	31	11	2	54	1.51
138232--138310	38	2.1	38	97	0	149	12	17	21	48	1.80
150398--152785	331	7.2	329	86	3	3162	35	16	14	32	1.90
150398--152775	666	3.6	660	87	3	3246	35	16	14	32	1.90
150399--152775	996	2.4	990	89	2	3591	35	16	14	32	1.90
152775--152802	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!