genome.fa.s20877.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020877.1 Corchorus olitorius cultivar O-4 contig20910, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129307

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1959	332	5.8	330	89	3	2787	36	16	14	32	1.89
2--1966	663	2.9	663	89	3	2825	36	16	14	32	1.89
1599--1629	2	15.5	2	93	0	53	48	0	3	48	1.17
3866--4055	40	4.8	40	84	1	238	26	37	20	14	1.92
3874--4055	79	2.3	80	88	0	267	28	36	20	14	1.92
4321--4370	15	3.1	15	76	15	55	42	0	6	52	1.26
11282--11307	12	2.2	12	100	0	52	50	23	11	15	1.76
11346--11462	40	2.9	40	97	0	216	28	11	15	44	1.82
13517--13572	29	1.9	29	92	0	94	42	30	5	21	1.75
17542--17573	2	16.0	2	100	0	64	50	0	0	50	1.00
20561--20607	24	2.0	24	100	0	94	34	4	21	40	1.73
23917--23974	19	2.9	20	82	5	73	36	12	20	31	1.89
34115--34158	23	1.9	23	90	0	70	72	0	22	4	1.02
43466--43497	13	2.5	13	94	0	55	12	18	46	21	1.82
44472--44513	12	3.5	12	80	0	57	35	16	7	40	1.76
44464--44518	24	2.3	24	100	0	110	32	21	9	36	1.85
44540--44598	24	2.5	24	100	0	118	16	32	18	32	1.94
53884--53914	15	2.1	15	100	0	62	38	22	25	12	1.90
56524--56587	23	2.7	23	92	2	110	54	0	15	29	1.41
56900--57062	60	2.7	60	86	1	211	38	14	17	29	1.89
56960--57060	31	3.3	31	71	10	100	38	16	19	24	1.92
56931--57031	29	3.4	29	75	10	96	36	15	18	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75929--75956	2	14.0	2	100	0	56	50	0	50	0	1.00
76378--76448	37	1.9	37	88	2	108	25	5	16	52	1.66
79207--79282	37	2.1	37	100	0	152	34	18	21	26	1.96
83358--83457	49	2.0	49	100	0	200	27	18	8	47	1.76
91150--91200	25	2.0	25	96	0	93	11	11	17	58	1.62
96128--96281	69	2.2	69	84	5	188	25	25	27	20	1.99
126113--126140	2	14.0	2	100	0	56	50	0	0	50	1.00
126208--126242	16	2.1	17	89	5	54	31	0	2	65	1.07
126570--126596	13	2.1	13	100	0	54	33	22	22	22	1.97

Tables:   1

The End!