Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020880.1 Corchorus olitorius cultivar O-4 contig20913, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19543
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:5656 original size:15 final size:15
Alignment explanation
Indices: 5632--5664 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
5622 GGCAGTTTTG
5632 CTTTGCTTGATGAAC
1 CTTTGCTTGATGAAC
*
5647 CTTTGGTTGATGAAC
1 CTTTGCTTGATGAAC
5662 CTT
1 CTT
5665 CATCATCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (15 bp):
CTTTGCTTGATGAAC
Found at i:8454 original size:316 final size:318
Alignment explanation
Indices: 7995--8587 Score: 720
Period size: 316 Copynumber: 1.9 Consensus size: 318
7985 CTCAGTTTTT
*
7995 TTTTTTGCAAAAATACTAAAAAAATATATATAATTCAATGCCAAAAAGATTAGAAGACTTTTCAC
1 TTTTTTGCAAAAATACTAAAAAAATATATATAATTCAACGCCAAAAAGATTAGAAGACTTTTCAC
* * * *
8060 GCTTTTAATATCGTTTTTCATATTTCTTTTGAATTAAGTTCTAATTAAATCAAAACAAGATTCAG
66 GCTTCTAATAACGTTTTTCACATTTCTTTCGAATTAAGTTCTAATTAAATCAAAACAAGATTCAG
* *
8125 ATGCATATAAAAACAAATCCTTAACTCCAATGTG-GTAGAGATTCGATTAAATGAATA-ACGATA
131 ATGCATATAAAAACAAATCCTTAAATCCAATGTGACT-GAGATTCGATTAAATGAATATA-GATA
* * *
8188 TTTCAAGGAGTCTCGGA-GCCAAAAATCCTGCAAAACAGAGTCGTAGCCCCAAAACGCGTTTTTA
194 TTTCAAAGAGT-TCGGACGCCAAAAATCATGCAAAACAGAGTCGTAGCCCCAAAACACGTTTTTA
*
8252 GTAAAAAACTGTGATGTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTCTCAA
258 GCAAAAAACTGTGATG-AGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTCTCAA
* * * **
8314 TTTTTTGCCACAATACTCATAAAAATATAT-T-ATTCAACGCCAAAAAGATT-GAAGGGGTTTTT
1 TTTTTTGCAAAAATACT-AAAAAAATATATATAATTCAACGCCAAAAAGATTAGAA--GACTTTT
* * *
8376 CACGCTTCTAATAACG-TTTTC-CATTT-TTTCGAATTGATTTCTAATTAAATCGAAACAAGATT
63 CACGCTTCTAATAACGTTTTTCACATTTCTTTCGAATTAAGTTCTAATTAAATCAAAACAAGATT
* * * * * * * **
8438 TAGATGC-TCGTAAAAACAAATCGTTAAATTCAATGTGACTGGGATTTGGTTCGATGAATATAGA
128 CAGATGCAT-ATAAAAACAAATCCTTAAATCCAATGTGACTGAGATTCGATTAAATGAATATAGA
*** * * * **
8502 TATTTCAAAGAGTTTTTACGCCAAAAATCATGCAAAACTGAGTTGTGGCCCCGGAACACGTTTTT
192 TATTTCAAAGAGTTCGGACGCCAAAAATCATGCAAAACAGAGTCGTAGCCCCAAAACACGTTTTT
8567 AGCAAAAAACTGTGATGAGTA
257 AGCAAAAAACTGTGATGAGTA
8588 AATTGAAGGG
Statistics
Matches: 231, Mismatches: 36, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
315 7 0.03
316 146 0.63
317 9 0.04
318 23 0.10
319 35 0.15
320 11 0.05
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (318 bp):
TTTTTTGCAAAAATACTAAAAAAATATATATAATTCAACGCCAAAAAGATTAGAAGACTTTTCAC
GCTTCTAATAACGTTTTTCACATTTCTTTCGAATTAAGTTCTAATTAAATCAAAACAAGATTCAG
ATGCATATAAAAACAAATCCTTAAATCCAATGTGACTGAGATTCGATTAAATGAATATAGATATT
TCAAAGAGTTCGGACGCCAAAAATCATGCAAAACAGAGTCGTAGCCCCAAAACACGTTTTTAGCA
AAAAACTGTGATGAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTCTCAA
Found at i:9259 original size:320 final size:318
Alignment explanation
Indices: 8664--10483 Score: 1746
Period size: 320 Copynumber: 5.6 Consensus size: 318
8654 AAAATTTTGC
*
8664 AAAAACTGACCCGAAAA-TTTTTTACTCAATTCTTTT-CCACAATACTCAGAAAAAATATATAAT
1 AAAAACTGACACGAAAAGTTTTTT-CTCAATT-TTTTGCCACAATACTCAGAAAAAATATATAAT
* * * * * * *
8727 TCAACGCCAAAAAATTGAAGAGTTTTTGACACTTATAATATCGTTTGTCCATTTTTTCTGAA-TA
64 TCAACGCCAAAAAATTGAAG-GCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTCCGAATTA
* *
8791 TATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGG
128 -ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAG
8856 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTC-AGCAAAAAATCATGCAAAAC
192 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTA-C-AAAAATCATGCAAAA-
* * * * * * * *
8920 TT-AGCCG-GGGTTCCGAAACGCGATTTTAACCTAAAACCGTGATGGTTAGTACATGAATTCGAC
254 TTGAGTCGAGGGCT-CGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGC
8983 T
318 T
* * * *
8984 AAAAACTGACATGAAATGTTTTTCCTCAATTTGTTGCCACAATACTCAGAAAAAATATATAATTC
1 AAAAACTGACACGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
* * * *
9049 AAAGCCAAAACGATTGACAGGCCTTTCACGCTTCTAATATCATTTTTCCA-TTTTTCCTAATTAA
66 AACGCCAAAA-AATTGA-AGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTCCGAATTAA
* * * ** *
9113 TTTCTAATTAAA-CAGAAACAAGATTCAGATGCTCGTATAAATAAATTCTTATGTCCAATGTCGC
129 TTTCTAATTAAATC-GAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAGC
* * *
9177 TGAGATTTGGTTATATGAATAAAGATATATCAAGGAGTCTTTCTACTAAAAATCATGCAAAATTG
193 TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTAC-AAAAATCATGCAAAATTG
* * *
9242 AG-CGAGGGCCTCGAAACGCGTTTTTTTGACTAAAACCGTGATGGTTAGTACACGATTTCGGCT
257 AGTCGAGGG-CTCGAAACGCG-TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * *
9305 AAAAACTGAC-TGAAAAATTTTTTCTTAATTTTTTGCAACAATACTCAGAAAAGAAATATATAAT
1 AAAAACTGACACGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAG-AAA-AAATATATAAT
* * ** *
9369 TTAACGCCAAAAAGATTGACAGGCTTTTCACGCTTATAATATTGTTTTTCCATTTTTTCAGAATT
64 TCAACGCCAAAAA-ATTGA-AGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTCCGAATT
* * * * * * *
9434 AATTTCTAATTTAATTGAAATAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCTAATGTGG
127 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAG
* * * *
9499 CTGAGATTTGTTTTGAT-ATTAATAGATATTTCAAGGAGTATTTGCGT-CAAAAATCATGCAAAA
192 CTGAGATTTGGTTAGATGAAT-ATAGATATTTCAAGGAGTCTTT-C-TACAAAAATCATGCAAAA
* * * * *
9562 TTGAG-CCAGGACTCCAGAACGCG-TTTTAGCCAAAAACCGTGATGATTAGTACACAATTTCGGC
254 TTGAGTCGAGGGCTCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGC
9625 T
318 T
* * *
9626 AAAAACT-AAACCGAAAAGTTTTTTCTCAATTTTTTGCCAAAATA-TCCATAAAAAATATATAAT
1 AAAAACTGACA-CGAAAAGTTTTTTCTCAATTTTTTGCCACAATACT-CAGAAAAAATATATAAT
* ** * *
9689 CCAACGCCAAGAGGATGGAAGGATTTTCACGCTTCTAATATCATTTTTCCA-TTTTT-CGAATTA
64 TCAACGCCAA-AAAATTGAAGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTCCGAATTA
* * * * * *
9752 ATTTCTGATTAAATCGAAAAAACATTCAGTTGCTCGTAAAAACAAATTCTTAAATCGAATGT-GT
128 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAG-
* * * ** * * *
9816 CTGAAATTTGGTTCGCTGAATATCTAAATTTCAAGGAGTCTTTACGACAAAAATCATGCGAAATT
192 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTACAAAAATCATGCAAAATT
* * * *
9881 GAGTC-AGGGCTCCGGAACACGTTTTTAGCCAAAAAACCGTGATGATTAGTACACGATTTGGGCT
256 GAGTCGAGGGCT-CGAAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * * *
9945 AAAATTTTGCAAAAGCTGACCCGAAAGGTTTTTTTTTTTCCAATTTTTTGACACAATACTCATAA
1 ---A------AAAA-CTGACACGAAAAG---TTTTTTCT-CAATTTTTTGCCACAATACTCAGAA
* * * * * * *
10010 AAAATATAAAATTCAACGCCAAAAAATTGAAGG-GTTTCACGCTTGTAGTATCGTTTTACAATTA
52 AAAATATATAATTCAACGCCAAAAAATTGAAGGCTTTTCACGCTTCTAATATCATTTTTC---CA
* * * ****
10074 TTTTTTCCGAATTTATTTTTAATTAAATCGAAACAAGATTTAGATGCTCGTAGGGCCAAATCCTT
114 TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
* * * * * *
10139 AAATGCAATGTAGCTGAGATTTGGTTAGATTAATATAGATATTTCAATGAGTTTTTCTGCCAATA
179 AAATCCAATGTAGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCT-ACAAAA
* * * * * *
10204 ACCATGGAAAACTAAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGG---GTACA
243 ATCATGCAAAATTGAGTCGAGGGCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
*
10266 CGATTTCAGCT
308 CGATTTCGGCT
* *** * * * *
10277 AAAAACTGACACGAAAAGTTTTTCCTCAAGACTTTGACACAATACTAAAAAAAAAAAATATAATT
1 AAAAACTGACACGAAAAGTTTTTTCTCAATTTTTTGCCACAATACT-CAGAAAAAATATATAATT
* * *
10342 CAACGCCAAAAAATT-AATGGGTTTTTCATGCTTCTAATATCATTTTATTTTCATTTTTTCCGAA
65 CAACGCCAAAAAATTGAA--GGCTTTTCACGCTTCTAATATCA--TT-TTTCCATTTTTTCCGAA
* * * **
10406 TTTATTTTTAAATAAATCGAAACAAGATTCAGATGCTCGTAAAGTCAAATCCTTAAATCCAATGT
125 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
*
10471 AGCTGAAATTTGG
190 AGCTGAGATTTGG
10484 CCAAAATTTT
Statistics
Matches: 1237, Mismatches: 201, Indels: 123
0.79 0.13 0.08
Matches are distributed among these distances:
316 1 0.00
317 120 0.10
318 36 0.03
319 102 0.08
320 251 0.20
321 231 0.19
322 105 0.08
323 133 0.11
324 4 0.00
325 1 0.00
328 4 0.00
329 9 0.01
330 1 0.00
331 21 0.02
332 29 0.02
333 41 0.03
334 2 0.00
335 19 0.02
336 122 0.10
337 5 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (318 bp):
AAAAACTGACACGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
AACGCCAAAAAATTGAAGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTCCGAATTAATT
TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTAGCTGA
GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTACAAAAATCATGCAAAATTGAGTC
GAGGGCTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
Found at i:16700 original size:323 final size:319
Alignment explanation
Indices: 15695--17609 Score: 1658
Period size: 323 Copynumber: 5.9 Consensus size: 319
15685 TCCATATATG
* * * *
15695 TCCAATGTGGCTTAGATTTGGTTAGATGACTATAGATATTTCAAGGAGTTTTTCA-GCCAAAAAT
1 TCCAATGTGACTGAGATTTGGTTA-ATGAATATAGATATTTCAAGGAGTCTTT-ATGCCAAAAAT
* * * * * *
15759 CATGCAAAACTGAGTTGAAGTCCCGAAACGCGTTTTTAGCCTAAAACCGTGATGGTTAGTACATG
64 CATGCAAAATTGAGTCG-GGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
** * * * * *
15824 ATTTTC-GACTAAAAACTGACCTGAAATGTTTTTCCACAATTTGTTGCCATAATACTCA-GAAAA
128 A-TTTCAG-CTAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAA
* * * ** * *
15887 AATATATAATTCAACGCCAAAACAATTGACGGGCCTTTCACGCTTCTAATATCATTTTTCCA--T
191 AATATATAATTCAACG-CAAAAAAAATGAAGGGTTTTTCAAGCTTCTAATATCGTTTTTCCATTT
* *
15950 TTTCCTAATTAATTTCTAATTAAA-CAGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAT
255 TTTCCGAATTAATTTCTAATTAAATC-GAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAA
16014 A
319 A
* * * * *
16015 TTCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGTCAAAAATC
1 TCCAATGTGACTGAGATTTGGTT-AATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATC
* * * * * * *
16080 ATGCAAAATTTAGACGGGGCTCCGTAATGCGTTTCTATCCAAAAACCATGAT-G-TAGTACACAA
65 ATGCAAAATTGAGTCGGGGC-CCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACAC--
* * * * *
16143 GTTAAAATTT-TGC-AAAAACTGACCCGAAAAGTTTTTCCTCAATTCTTTGACACAATACTCAGA
127 G-----ATTTCAGCTAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCA-T
* * * * * * *
16206 AAAAAAAAATATAATTCAACAC-AAGAAAATTAATGGGTTTTT-ATGCTCCTAATATCGTTTTTT
186 AAAAAAATATATAATTCAACGCAAAAAAAATGAA-GGGTTTTTCAAGCTTCTAATATCGTTTTTC
* * * ** **
16269 CATTATTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCTTTTAAAGCCAAATC
250 CATT-TTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATC
16334 CTTAAA
314 CTTAAA
* * * *
16340 TCCAGTGT-AGCTGAGATTTGGTTAGATGAATATAGATATTTTAAGAAGTCTTTATGCCAAAAAC
1 TCCAATGTGA-CTGAGATTTGGTTA-ATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAAT
* * * *
16404 CAAGCAAAATTGAGTCGAGGCCCTGAAACGCGTTTTTATCCAAAAACCATGATGGTTAGTACACG
64 CATGCAAAATTGAGTCGGGGCCC-GAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
* * *
16469 ATTTCAGCTAAAAACTGACCCAAAAACTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAGAA
128 ATTTCAGCTAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAAAA
* * * *
16534 CATATAATTCAATGCAAAAAAAAAATGAAGGTTTTTTCAAGCTTCTAATATTGTTTTTCCATTTT
193 TATATAATTCAACGC--AAAAAAAATGAAGGGTTTTTCAAGCTTCTAATATCGTTTTTCCATTTT
* * * * * **
16599 TTCCGAATTAATTTCAAATTAAATCGAAACAAGATTCCGATACTCATATAAACAAATCGATAAA
256 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAA
* * * * *
16663 TCCAACGAT-ACTGGGATTTGGTTCAATGAATATAGATATTTCAAGAAGTCTTTACGCCGAAAAT
1 TCCAATG-TGACTGAGATTTGGTT-AATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAAT
* * * * * ** * *
16727 TATGCAAAACTAAGTCGTGGCCCTGGAACTAGTTTTTAGCCAAAAACCGTGAT-G--AGTAAACA
64 CATGCAAAATTGAGTCGGGGCCC-GAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
* * *
16789 ATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAA-TTTTTCCTCAATTCTTAGCCACAATAC
128 ATTTCAGC--------T--AAAAACTGACC-CAAAAAGTTTTTCCTCAATTTTTTGCCACAATAC
* * * * * *
16853 T-TTGAAAAAAATATATAATTCAATGCCAAAAAATTGAAGGGTTTTTGACA-CTTATAATATCGT
182 TCAT-AAAAAAATATATAATTCAACGCAAAAAAAATGAAGGGTTTTTCA-AGCTTCTAATATCGT
* *
16916 TTTTCCATTTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCGGATGCTCGTAAAA
245 TTTTCCA---TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
16981 ACAAATCCTTAAA
307 ACAAATCCTTAAA
* * * * * ** * * *
16994 TCCATTGTGGCTGAGATTTGGTAAAATGAAAAAAGATAAATCAAGGAGACTTTCTACCAAAAATC
1 TCCAATGTGACTGAGATTTGGT-TAATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATC
* * *
17059 ATGCAAAATTGAG-CGGGGGCCCCGAAACGTGTTTTTTGCCCAAAACCGTGATGGTTAGTACACG
65 ATGCAAAATTGAGTC-GGGG-CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
* * ** * * *
17123 TTTTCGGCTAAAAACTGACTGAAAAAGTTTTT-CTTAATTTTTTGCAACAATACTCAGAAAAAAA
128 ATTTCAGCTAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAAAA
* * * * * *
17187 TATATAATTCAACGCCAAAAAGATTGACA-AGCTTTTCACA-CTTCTAATATCGTTTTCCCACTT
193 TATATAATTCAACG-CAAAAAAAATGA-AGGGTTTTTCA-AGCTTCTAATATCGTTTTTCCATTT
** * * * * * *
17250 TTTAAGAATTAATTTATAATTTAATCGAAATAAGATTTAGATGCTCGTAGAAACAAATCCTTATA
255 TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAA
** * * **
17315 TTTAATGTGACTGAGATTTGATT--TGATATTTATAGATATTTCAAGGAGTATTTGCGCCAAAAA
1 TCCAATGTGACTGAGATTTGGTTAATGA-A--TATAGATATTTCAAGGAGTCTTTATGCCAAAAA
**
17378 TCATGCAAAATTGACCCGGGGCTCC-AGAACGCG-TTTTAGCCAAAAACCGTGATGGTTAGTACA
63 TCATGCAAAATTGAGTCGGGGC-CCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
* * * *
17441 CGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTATTGCCACAATACTCAT-AAAA
126 CGATTTCAGCTAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAA
* * * * ** ** * * *
17505 TATATATAATCCAAAGCCAAAAGGATGAAAAGATTTTCACGCTTCTAATATCATTTTTCCATTTT
191 AATATATAATTCAACGCAAAAAAAATGAAGGGTTTTTCAAGCTTCTAATATCGTTTTTCCATTTT
* * *
17570 TT-CGAATTAATTTCTAATCAGATCGAAAAAAGATTCAGAT
256 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGAT
17610 ATTTCAAGGA
Statistics
Matches: 1292, Mismatches: 236, Indels: 136
0.78 0.14 0.08
Matches are distributed among these distances:
318 42 0.03
319 44 0.03
320 189 0.15
321 164 0.13
322 111 0.09
323 207 0.16
324 108 0.08
325 154 0.12
326 3 0.00
327 8 0.01
328 37 0.03
329 2 0.00
330 58 0.04
331 149 0.12
332 4 0.00
334 12 0.01
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (319 bp):
TCCAATGTGACTGAGATTTGGTTAATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCA
TGCAAAATTGAGTCGGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
TCAGCTAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCACAATACTCATAAAAAAATAT
ATAATTCAACGCAAAAAAAATGAAGGGTTTTTCAAGCTTCTAATATCGTTTTTCCATTTTTTCCG
AATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAA
Found at i:17351 original size:652 final size:643
Alignment explanation
Indices: 15751--17431 Score: 1832
Period size: 652 Copynumber: 2.6 Consensus size: 643
15741 AGTTTTTCAG
* * * * * *
15751 CCAAAAATCATGCAAAACTGAGTTGAAGTCCCGAAACGCGTTTTTAGCCTAAAACCGTGATGGTT
1 CCAAAAATCATGCAAAATTGAG-CGAGGCCCCGAAACGCGTTTTTTGCCAAAAACCGTGATGGTT
* * * * * *
15816 AGTACATGATTTTCGACTAAAAACTGACCTG-AAATGTTTTTCCACAATTTGTTGCCATAATACT
65 AGTACACG-TTTTCGGCTAAAAACTGA-CTGAAAAAGTTTTT-CTCAATTTTTTGCCACAATACT
* * * *
15880 CAG-AAAAAATATATAATTCAACGCCAAAACAATTGACGGGCCTTTCACGCTTCTAATATCATTT
127 CAGAAAAAAATATATAATTCAACGCCAAAA-AATTGACAGGCTTTTCACACTTCTAATATCGTTT
* * *
15944 TTCCA-TTTTCCTAATTAATTTCTAA-TTAAACAGAAACAAGATTCAGATGCTCGTAAAAACAAA
191 TTCCATTTTTCCGAATTAATTTATAATTTAATC-GAAACAAGATTCAGATGCTCGTAAAAACAAA
* * *
16007 TCCTTATATTCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGT
255 TCCTTATATTCAATGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGC
* * * * *
16072 CAAAAATCATGCAAAATTTAGACGGGGCTCCGTAATGCGTTTCTATCCAAAAACCATGATGTAGT
320 CAAAAATCATGCAAAACTAAGACGGGGCTCCGGAATGAGTTTCTAGCCAAAAACCATGATGTAGT
* * * *
16137 ACACAAGTTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTCTTTGACACAATACT
385 AAACAAGCTAAAATTTTGCAAAAACTGACCCGAAAAATTTTTCCTCAATTCTTAGACACAATACT
** *
16202 CAGAAAAAAAAAATATAATTCAACACAAGAAAATTAATGGGTTTTTATGCTCCTAATATCGTTTT
450 CAGAAAAAAAAAATATAATTCAACACAAGAAAATTAATGGGTTTTTACACTCATAATATCGTTTT
* * ** **
16267 TTCATTATTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGCTTTTAAAGCCAAA
515 TCCATTATTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
* * * * ** * * *
16332 TCCTTAAATCCAGTGTAGCTGAGATTTGGTTAGATGAATATAGATATTTTAAGAAGTCTTTATG
580 TCCTTAAATCCAGTGTAGCTGAGATTTGGTAAAATGAAAAAAGATAAATCAAGAAGACTTTATA
* * * *
16396 CCAAAAACCAAGCAAAATTGAGTCGAGGCCCTGAAACGCGTTTTTAT-CCAAAAACCATGATGGT
1 CCAAAAATCATGCAAAATTGAG-CGAGGCCCCGAAACGCGTTTTT-TGCCAAAAACCGTGATGGT
* * ** *
16460 TAGTACACGATTTCAGCTAAAAACTGACCCAAAAACTTTTTTCTCAATTTTTTGCCACAATACTC
64 TAGTACACGTTTTCGGCTAAAAACTGACTGAAAAA-GTTTTTCTCAATTTTTTGCCACAATACTC
* * * * * * * *
16525 ATAAAAGAACATATAATTCAATGCAAAAAAAAAATGA-AGGTTTTTTCA-AGCTTCTAATATTGT
128 AGAAAAAAATATATAATTCAACGC--CAAAAAATTGACAGG-CTTTTCACA-CTTCTAATATCGT
* * * * *
16588 TTTTCCATTTTTTCCGAATTAATTTCA-AATTAAATCGAAACAAGATTCCGATACTCATATAAAC
189 TTTTCCA-TTTTTCCGAATTAATTT-ATAATTTAATCGAAACAAGATTCAGATGCTCGTAAAAAC
** * * * * * *
16652 AAATCGATAAATCCAACGAT-ACTGGGATTTGGTTCAATGAATATAGATATTTCAAGAAGTCTTT
252 AAATCCTTATATTCAATG-TGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
* * * * * * *
16716 ACGCCGAAAATTATGCAAAACTAAGTCGTGGC-CCTGGAACT-AGTTTTTAGCCAAAAACCGTGA
316 GCGCCAAAAATCATGCAAAACTAAGACGGGGCTCC-GGAA-TGAGTTTCTAGCCAAAAACCATGA
*
16779 TG-AGTAAACAATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAATTTTTCCTCAATTCTTA
379 TGTAGTAAAC-A----AGCTAAAATTTTGCAAAAACTGACCCGAAAAATTTTTCCTCAATTCTTA
* ** *
16843 GCCACAATACTTTG-AAAAAAATATATAATTCAATGC-CAA-AAAATTGAA-GGGTTTTTGACAC
439 GACACAATACTCAGAAAAAAAAAATATAATTCAA--CACAAGAAAATT-AATGGGTTTTT-ACAC
* * *
16904 TTATAATATCGTTTTTCCATTTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCGG
500 TCATAATATCGTTTTTCCA-TTATTTTT-CGAATTTATTTCTAATTAAATCGAAACAAGATTCAG
* *
16969 ATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTAAAATGAAAAAAGATAAA
563 ATGCTCGTAAAAACAAATCCTTAAATCCAGTGTAGCTGAGATTTGGTAAAATGAAAAAAGATAAA
* *
17034 TCAAGGAGACTTTCTA
628 TCAAGAAGACTTTATA
* * *
17050 CCAAAAATCATGCAAAATTGAGCGGGGGCCCCGAAACGTGTTTTTTGCCCAAAACCGTGATGGTT
1 CCAAAAATCATGCAAAATTGAGC-GAGGCCCCGAAACGCGTTTTTTGCCAAAAACCGTGATGGTT
* *
17115 AGTACACGTTTTCGGCTAAAAACTGACTGAAAAAGTTTTTCTTAATTTTTTGCAACAATACTCAG
65 AGTACACGTTTTCGGCTAAAAACTGACTGAAAAAGTTTTTCTCAATTTTTTGCCACAATACTCAG
* *
17180 AAAAAAATATATAATTCAACGCCAAAAAGATTGACAAGCTTTTCACACTTCTAATATCGTTTTCC
130 AAAAAAATATATAATTCAACGCCAAAAA-ATTGACAGGCTTTTCACACTTCTAATATCGTTTTTC
** * * *
17245 CACTTTTTAAGAATTAATTTATAATTTAATCGAAATAAGATTTAGATGCTCGTAGAAACAAATCC
194 CA-TTTTTCCGAATTAATTTATAATTTAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * * * *
17310 TTATATTTAATGTGACTGAGATTTGATTTGAT-ATTTATAGATATTTCAAGGAGTATTTGCGCCA
258 TTATATTCAATGTGACTGAGATTTGGTTCGATGA-ATATAGATATTTCAAGGAGTCTTTGCGCCA
* * ** * * * *
17374 AAAATCATGCAAAATTGACCCGGGGCTCCAGAACGCGTTT-TAGCCAAAAACCGTGATG
322 AAAATCATGCAAAACTAAGACGGGGCTCCGGAATGAGTTTCTAGCCAAAAACCATGATG
17432 GTTAGTACAC
Statistics
Matches: 844, Mismatches: 156, Indels: 66
0.79 0.15 0.06
Matches are distributed among these distances:
643 1 0.00
644 39 0.05
645 86 0.10
646 28 0.03
647 12 0.01
648 141 0.17
649 6 0.01
651 58 0.07
652 230 0.27
653 61 0.07
654 182 0.22
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (643 bp):
CCAAAAATCATGCAAAATTGAGCGAGGCCCCGAAACGCGTTTTTTGCCAAAAACCGTGATGGTTA
GTACACGTTTTCGGCTAAAAACTGACTGAAAAAGTTTTTCTCAATTTTTTGCCACAATACTCAGA
AAAAAATATATAATTCAACGCCAAAAAATTGACAGGCTTTTCACACTTCTAATATCGTTTTTCCA
TTTTTCCGAATTAATTTATAATTTAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
TATTCAATGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAA
TCATGCAAAACTAAGACGGGGCTCCGGAATGAGTTTCTAGCCAAAAACCATGATGTAGTAAACAA
GCTAAAATTTTGCAAAAACTGACCCGAAAAATTTTTCCTCAATTCTTAGACACAATACTCAGAAA
AAAAAAATATAATTCAACACAAGAAAATTAATGGGTTTTTACACTCATAATATCGTTTTTCCATT
ATTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
AATCCAGTGTAGCTGAGATTTGGTAAAATGAAAAAAGATAAATCAAGAAGACTTTATA
Found at i:18135 original size:581 final size:582
Alignment explanation
Indices: 17132--18191 Score: 1383
Period size: 582 Copynumber: 1.8 Consensus size: 582
17122 GTTTTCGGCT
* * *
17132 AAAAACTGACTGAAAAAGTTTTTCTTAATTTTTTGCAACAATACTCAGAAAAAAATATATAATTC
1 AAAAACTGACTGAAAAAGTTTTTCTCAATTCTTAGCAACAATACTCAGAAAAAAATATATAATTC
*
17197 AACGCCAAAAAGATTGACAAGCTTTTCACACTTCTAATATCGTTTTCCCACTTTTTAAGAATTAA
66 AACGCCAAAAAGATTGACAAGCTTTTCACACTTATAATATCGTTTTCCCACTTTTTAAGAATTAA
* * * * * * *
17262 TTTATAATTTAATCGAAATAAGATTTAGATGCTCGTAGAAACAAATCCTTATATTTAATGTGACT
131 TTTATAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAATCTAATGTGACT
* * * * * *
17327 GAGATTTGATTTGATATTTATAGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGA
196 GAGATTTGATTAGATATATAAAGATATATCAAGGAGTACTTGCACCAAAAATCATGCAAAATTGA
* *
17392 CCCGGGGCTCCAGAACGCGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAA
261 ACCGGGACTCCAGAACGCGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAA
* *
17457 CTGACCCGAAAAGTTTTTTCTCAATTTATTGCCACAATACTCATAAAATATATATAATCCAAAGC
326 CTGACCCGAAAAGTTTTTTCTCAATTTATTGCAACAATACTCAGAAAATATATATAATCCAAAGC
* * * *
17522 CAAAAGGATGAAAAGATTTTCACGCTTCTAATATCATTTTTCCATTTTTT-CGAATTAATTTCTA
391 CAAAAAGATGAAAAGATTTTCACACTTCTAATATCATTTTCCCATTTTTTAAGAATTAATTTCTA
17586 A-TCAGATCGAAAAAAGATTCAGATATTTCAAGGAGTCTTTACACCGAAAATCATGCAAAAATAA
456 ATTCA-ATCGAAAAAAGATTCAGATATTTCAAGGAGTCTTTACACCGAAAATCATGCAAAAATAA
17650 GTCGAGGCCCCGGAACTTGTTTTTAGCCAAAAAATGAGTAAACGATTTCAGCTAAAATTTTGC
520 GTCGAGGCCCCGGAACTTGTTTTTAGCCAAAAAATGAGTAAACGATTTCAGCTAAAATTTTGC
* * **
17713 AAAAACTGACCTGAACAA-TTTTTCCTCAATTCTTAGCCACAATACTTTG-AAAAAATATATAAT
1 AAAAACTGA-CTGAAAAAGTTTTT-CTCAATTCTTAGCAACAATACTCAGAAAAAAATATATAAT
* * * * * * * *
17776 TCAATGCCAATAA-ATTGA-AGGGTTTTTGACACTTATAATATCGTTTTTCCATTTATTTTCAGA
64 TCAACGCCAAAAAGATTGACA-AGCTTTTCACACTTATAATATCGTTTTCCCA-CT-TTTTAAGA
* * *
17839 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAATCTATTG
126 ATTAATTTATAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAATCTAATG
* *
17904 TGGCTGAGATTTGGTTAGATCA-ATAAAGATATATCAAGGAG-ACTT-CTACCAAAAATCATGCA
191 TGACTGAGATTTGATTAGAT-ATATAAAGATATATCAAGGAGTACTTGC-ACCAAAAATCATGCA
* * *
17966 AAATT-AAGCGGGA--CCACGAAACGCGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTT
254 AAATTGAACCGGGACTCCA-G-AACGCG-TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* * *
18028 CGGCTAAAAACTGA-CTGAAAAG-TTTTTCTTAATTTTTTGCAACAATACTCAGAAAATAATATA
316 CGGCTAAAAACTGACCCGAAAAGTTTTTTCTCAATTTATTGCAACAATACTCAGAAAAT-ATATA
* * *** * *
18091 TAATTCAACGCCAAAAAGATTGACGGGCTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAG
380 TAATCCAAAGCCAAAAAGA-TGAAAAGATTTTCACACTTCTAATATCATTTTCCCATTTTTTAAG
* * *
18156 AATTAATTTCTAATTTAATCGAAATAAGATTTAGAT
444 AATTAATTTCTAATTCAATCGAAAAAAGATTCAGAT
18192 GCTCGTAAAA
Statistics
Matches: 407, Mismatches: 58, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
578 3 0.01
579 33 0.08
580 71 0.17
581 145 0.36
582 152 0.37
583 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (582 bp):
AAAAACTGACTGAAAAAGTTTTTCTCAATTCTTAGCAACAATACTCAGAAAAAAATATATAATTC
AACGCCAAAAAGATTGACAAGCTTTTCACACTTATAATATCGTTTTCCCACTTTTTAAGAATTAA
TTTATAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAATCTAATGTGACT
GAGATTTGATTAGATATATAAAGATATATCAAGGAGTACTTGCACCAAAAATCATGCAAAATTGA
ACCGGGACTCCAGAACGCGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAA
CTGACCCGAAAAGTTTTTTCTCAATTTATTGCAACAATACTCAGAAAATATATATAATCCAAAGC
CAAAAAGATGAAAAGATTTTCACACTTCTAATATCATTTTCCCATTTTTTAAGAATTAATTTCTA
ATTCAATCGAAAAAAGATTCAGATATTTCAAGGAGTCTTTACACCGAAAATCATGCAAAAATAAG
TCGAGGCCCCGGAACTTGTTTTTAGCCAAAAAATGAGTAAACGATTTCAGCTAAAATTTTGC
Found at i:19138 original size:320 final size:320
Alignment explanation
Indices: 18619--19419 Score: 931
Period size: 320 Copynumber: 2.5 Consensus size: 320
18609 AAAATTTTGC
* * * **
18619 AAAAACTGACCTGAAAAATTTTTCCTCAATTCTTAGCCACAATACTTTGAAAA-AATATATAATT
1 AAAAACTGACCTGAAAAATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAATAATATATAATT
* * * * * * *
18683 CAATGCCAAAAA-ATTGAAGGGTTTTTGACACTTATAATATCGTTTTTCCAATTTTTTTTCCA-A
66 CAAAGCCAAAAAGATTG-AGAGATTTTCACACTTCTAATATCG-TTTTCCCA--TTTTTT-AAGA
* * * * *
18746 ATTTATTTCTAATTAAATCGAAACAAGATTCGGATGCTCGTAAAAACAAATCCTAAAATCCATTT
126 ATTAATTTCTAATTAAATCGAAAAAAGATTCAGATGCTCGTAAAAACAAATCCTAAAATCCAATG
18811 TGGCTGAGATTTGATTAGATGA-AAAAAGATATATCAAGGAG-ACTTT-CTACCAAAAATCATGC
191 TGGCTGAGATTTGATTAGAT-ATAAAAAGATATATCAAGGAGTA-TTTGC-ACCAAAAATCATGC
* * * * *
18873 AAAATTGA-GCGGGGC-CCCGAAACGCGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTT
253 AAAATTGACCCGGGGCACCAG-AACACG-TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
18936 CGGCT
316 CGGCT
* *
18941 AAAAACTGA-CTGAAAAATTTTTTCTTAATTTTTTGCAACAATACTCAGAAAATAATATATAATT
1 AAAAACTGACCTGAAAAATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAATAATATATAATT
* *
19005 CAACGCCAAAAAGATTGACGAGCTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTA
66 CAAAGCCAAAAAGATTGA-GAGATTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTA
* * * * * * * *
19070 ATTTCTAATTTAATCGAAATAAGATTTAGATGCTCGTAAAAGCAAATCTTTATATCTAATGTGGC
130 ATTTCTAATTAAATCGAAAAAAGATTCAGATGCTCGTAAAAACAAATCCTAAAATCCAATGTGGC
* ** * * *
19135 TGAGATTTGATTTGATATTTATAGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTG
195 TGAGATTTGATTAGATATAAAAAGATATATCAAGGAGTATTTGCACCAAAAATCATGCAAAATTG
19200 ACCCGGGGCACCAGAACACGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
260 ACCCGGGGCACCAGAACACGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * * *
19261 AAAAACTGACCCGAAAAGTTTTTTCTCAATTTATTGCCACAATACTCATAAAAT-ATATATAATC
1 AAAAACTGACCTGAAAAATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAATAATATATAATT
* * * * * * **
19325 CAAAGCCAAAAGGATGGAAAGATTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCGAATTAA
66 CAAAGCCAAAAAGATTGAGAGATTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAA
*
19390 TTTCT-ATTCAGATCGAAAAAAGATTCAGAT
131 TTTCTAATT-AAATCGAAAAAAGATTCAGAT
19420 ATTTCAAGGA
Statistics
Matches: 410, Mismatches: 58, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
318 3 0.01
319 64 0.16
320 190 0.46
321 87 0.21
322 42 0.10
323 24 0.06
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (320 bp):
AAAAACTGACCTGAAAAATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAATAATATATAATT
CAAAGCCAAAAAGATTGAGAGATTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAA
TTTCTAATTAAATCGAAAAAAGATTCAGATGCTCGTAAAAACAAATCCTAAAATCCAATGTGGCT
GAGATTTGATTAGATATAAAAAGATATATCAAGGAGTATTTGCACCAAAAATCATGCAAAATTGA
CCCGGGGCACCAGAACACGTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
Found at i:19195 original size:909 final size:908
Alignment explanation
Indices: 16696--19542 Score: 5131
Period size: 909 Copynumber: 3.1 Consensus size: 908
16686 CAATGAATAT
* * * * *
16696 AGATATTTCAAGAAGTCTTTACGCCGAAAATTATGCAAAACTAAGTCGTGGCCCTGGAACTAGTT
1 AGATATTTCAAGGAGTCTTTACGCCGAAAATCATGCAAAACTAAGTCGAGGCCCCGGAACTTGTT
*
16761 TTTAGCCAAAAACCGTGATGAGTAAACAATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAA
66 TTTAGCCAAAAACCGTGATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAA
16826 TTTTTCCTCAATTCTTAGCCACAATACTTTGAAAAAAATATATAATTCAATGCCAAAAAATTGAA
131 TTTTTCCTCAATTCTTAGCCACAATACTTTG-AAAAAATATATAATTCAATGCCAAAAAATTGAA
* *
16891 GGGTTTTTGACACTTATAATATCGTTTTTCCATTTTTTTTTCCGAATTTATTTCTAATTAAATCG
195 GGGTTTTTGACACTTATAATATCGTTTTTCCAATTTTTTTTCCAAATTTATTTCTAATTAAATCG
* *
16956 AAACAAGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTAAAAT
260 AAACAAGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGAT
*
17021 GAAAAAAGATAAATCAAGGAGACTTTCTACCAAAAATCATGCAAAATTGAGCGGGGGCCCCGAAA
325 GAAAAAAGATATATCAAGGAGACTTTCTACCAAAAATCATGCAAAATTGAGC-GGGGCCCCGAAA
* *
17086 CGTGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGTTTTCGGCTAAAAACTGACTGAAAAAGT
389 CGCGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACTGAAAAAGT
* *
17151 TTTTCTTAATTTTTTGCAACAATACTCAGAAAAAAATATATAATTCAACGCCAAAAAGATTGACA
454 TTTTCTTAATTTTTTGCAACAATACTCAGAAAATAATATATAATTCAACGCCAAAAAGATTGACG
* *
17216 AGCTTTTCACACTTCTAATATCGTTTTCCCACTTTTTAAGAATTAATTTATAATTTAATCGAAAT
519 AGCTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAATTTCTAATTTAATCGAAAT
* * *
17281 AAGATTTAGATGCTCGTAGAAACAAATCCTTATATTTAATGTGACTGAGATTTGATTTGATATTT
584 AAGATTTAGATGCTCGTA-AAACAAATCTTTATATCTAATGTGGCTGAGATTTGATTTGATATTT
17346 ATAGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGACCCGGGGCTCCAGAACGCG
648 ATAGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGACCCGGGGCTCCAGAACGCG
17411 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT
713 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT
*
17476 CTCAATTTATTGCCACAATACTCATAAAATATATATAATCCAAAGCCAAAAGGATGAAAAGATTT
778 CTCAATTTATTGCCACAATACTCATAAAATATATATAATCCAAAGCCAAAAGGATGGAAAGATTT
*
17541 TCACGCTTCTAATATCATTTTTCCA-TTTTTTCGAATTAATTTCTAATCAGATCGAAAAAAGATT
843 TCACGCTTCTAATATCATTTTTCCATTTTTTTCGAATTAATTTCTATTCAGATCGAAAAAAGATT
17605 C
908 C
* *
17606 AGATATTTCAAGGAGTCTTTACACCGAAAATCATGCAAAAATAAGTCGAGGCCCCGGAACTTGTT
1 AGATATTTCAAGGAGTCTTTACGCCGAAAATCATGCAAAACTAAGTCGAGGCCCCGGAACTTGTT
*
17671 TTTAGCCAAAAA-----ATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAACAA
66 TTTAGCCAAAAACCGTGATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAA
*
17731 TTTTTCCTCAATTCTTAGCCACAATACTTTGAAAAAATATATAATTCAATGCCAATAAATTGAAG
131 TTTTTCCTCAATTCTTAGCCACAATACTTTGAAAAAATATATAATTCAATGCCAAAAAATTGAAG
*
17796 GGTTTTTGACACTTATAATATCGTTTTTCC-ATTTATTTT-CAGAATTTATTTCTAATTAAATCG
196 GGTTTTTGACACTTATAATATCGTTTTTCCAATTTTTTTTCCA-AATTTATTTCTAATTAAATCG
* * *
17859 AAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAATCTATTGTGGCTGAGATTTGGTTAGAT
260 AAACAAGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGAT
* * * * *
17924 CAATAAAGATATATCAAGGAGAC-TTCTACCAAAAATCATGCAAAATTAAGCGGGACCACGAAAC
325 GAAAAAAGATATATCAAGGAGACTTTCTACCAAAAATCATGCAAAATTGAGCGGGGCCCCGAAAC
17988 GCGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACTG-AAAAGTT
390 GCGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACTGAAAAAGTT
*
18052 TTTCTTAATTTTTTGCAACAATACTCAGAAAATAATATATAATTCAACGCCAAAAAGATTGACGG
455 TTTCTTAATTTTTTGCAACAATACTCAGAAAATAATATATAATTCAACGCCAAAAAGATTGACGA
18117 GCTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAATTTCTAATTTAATCGAAATA
520 GCTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAATTTCTAATTTAATCGAAATA
18182 AGATTTAGATGCTCGTAAAAACAAATCCTTT-TATCTAATGTGGCTGAGATTTGATTTGATATTT
585 AGATTTAGATGCTCGT-AAAACAAAT-CTTTATATCTAATGTGGCTGAGATTTGATTTGATATTT
*
18246 ATAGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGACCCGAGGCTCCAGAACGCG
648 ATAGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGACCCGGGGCTCCAGAACGCG
18311 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT
713 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTT
*
18376 CTCAATTTATTGCCACAATACTCATAAAAAATATATAATCCAAAGCCAAAAGGATGGAAAGATTT
778 CTCAATTTATTGCCACAATACTCATAAAATATATATAATCCAAAGCCAAAAGGATGGAAAGATTT
18441 TCACGCTTCTAATATCATTTTTCCATTTTTTTCGAATTAATTTCTATTCAGATCGAAAAAAGATT
843 TCACGCTTCTAATATCATTTTTCCATTTTTTTCGAATTAATTTCTATTCAGATCGAAAAAAGATT
18506 C
908 C
18507 AGATATTTCAAGGAGTCTTTACGCCGAAAATCATGCAAAACTAAGTCGAGGCCCCGGAACTTGTT
1 AGATATTTCAAGGAGTCTTTACGCCGAAAATCATGCAAAACTAAGTCGAGGCCCCGGAACTTGTT
18572 TTTAGCCAAAAACCGTGATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAA
66 TTTAGCCAAAAACCGTGATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAA
18637 TTTTTCCTCAATTCTTAGCCACAATACTTTGAAAAAATATATAATTCAATGCCAAAAAATTGAAG
131 TTTTTCCTCAATTCTTAGCCACAATACTTTGAAAAAATATATAATTCAATGCCAAAAAATTGAAG
18702 GGTTTTTGACACTTATAATATCGTTTTTCCAATTTTTTTTCCAAATTTATTTCTAATTAAATCGA
196 GGTTTTTGACACTTATAATATCGTTTTTCCAATTTTTTTTCCAAATTTATTTCTAATTAAATCGA
* * *
18767 AACAAGATTCGGATGCTCGTAAAAACAAATCCTAAAATCCATTTTGGCTGAGATTTGATTAGATG
261 AACAAGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATG
18832 AAAAAAGATATATCAAGGAGACTTTCTACCAAAAATCATGCAAAATTGAGCGGGGCCCCGAAACG
326 AAAAAAGATATATCAAGGAGACTTTCTACCAAAAATCATGCAAAATTGAGCGGGGCCCCGAAACG
*
18897 CGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACTGAAAAATTTT
391 CGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACTGAAAAAGTTT
18962 TTCTTAATTTTTTGCAACAATACTCAGAAAATAATATATAATTCAACGCCAAAAAGATTGACGAG
456 TTCTTAATTTTTTGCAACAATACTCAGAAAATAATATATAATTCAACGCCAAAAAGATTGACGAG
19027 CTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAATTTCTAATTTAATCGAAATAA
521 CTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAATTTCTAATTTAATCGAAATAA
19092 GATTTAGATGCTCGTAAAAGCAAATCTTTATATCTAATGTGGCTGAGATTTGATTTGATATTTAT
586 GATTTAGATGCTCGTAAAA-CAAATCTTTATATCTAATGTGGCTGAGATTTGATTTGATATTTAT
* *
19157 AGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGACCCGGGGCACCAGAACACGTT
650 AGATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGACCCGGGGCTCCAGAACGCGTT
19222 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCT
715 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCT
19287 CAATTTATTGCCACAATACTCATAAAATATATATAATCCAAAGCCAAAAGGATGGAAAGATTTTC
780 CAATTTATTGCCACAATACTCATAAAATATATATAATCCAAAGCCAAAAGGATGGAAAGATTTTC
19352 ACGCTTCTAATATCATTTTTCCATTTTTTTCGAATTAATTTCTATTCAGATCGAAAAAAGATTC
845 ACGCTTCTAATATCATTTTTCCATTTTTTTCGAATTAATTTCTATTCAGATCGAAAAAAGATTC
* **
19416 AGATATTTCAAGGAGTCTTTACGCTGAAAATCATGCAAAACTAAGTCGAGGCCCCATAACTTGTT
1 AGATATTTCAAGGAGTCTTTACGCCGAAAATCATGCAAAACTAAGTCGAGGCCCCGGAACTTGTT
19481 TTTAGCCAAAAACCGTGATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAA
66 TTTAGCCAAAAACCGTGATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAA
19543 C
Statistics
Matches: 1859, Mismatches: 63, Indels: 31
0.95 0.03 0.02
Matches are distributed among these distances:
900 404 0.22
901 184 0.10
902 28 0.02
903 108 0.06
904 63 0.03
905 77 0.04
906 141 0.08
907 109 0.06
908 105 0.06
909 570 0.31
910 70 0.04
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32
Consensus pattern (908 bp):
AGATATTTCAAGGAGTCTTTACGCCGAAAATCATGCAAAACTAAGTCGAGGCCCCGGAACTTGTT
TTTAGCCAAAAACCGTGATGAGTAAACGATTTCAGCTAAAATTTTGCAAAAACTGACCTGAAAAA
TTTTTCCTCAATTCTTAGCCACAATACTTTGAAAAAATATATAATTCAATGCCAAAAAATTGAAG
GGTTTTTGACACTTATAATATCGTTTTTCCAATTTTTTTTCCAAATTTATTTCTAATTAAATCGA
AACAAGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATG
AAAAAAGATATATCAAGGAGACTTTCTACCAAAAATCATGCAAAATTGAGCGGGGCCCCGAAACG
CGTTTTTTGCCCAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACTGAAAAAGTTT
TTCTTAATTTTTTGCAACAATACTCAGAAAATAATATATAATTCAACGCCAAAAAGATTGACGAG
CTTTTCACACTTCTAATATCGTTTTCCCATTTTTTAAGAATTAATTTCTAATTTAATCGAAATAA
GATTTAGATGCTCGTAAAACAAATCTTTATATCTAATGTGGCTGAGATTTGATTTGATATTTATA
GATATTTCAAGGAGTATTTGCGCCAAAAATCATGCAAAATTGACCCGGGGCTCCAGAACGCGTTT
TAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTCTC
AATTTATTGCCACAATACTCATAAAATATATATAATCCAAAGCCAAAAGGATGGAAAGATTTTCA
CGCTTCTAATATCATTTTTCCATTTTTTTCGAATTAATTTCTATTCAGATCGAAAAAAGATTC
Done.