Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020882.1 Corchorus olitorius cultivar O-4 contig20915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116903

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9514--9563
21
2.5
19
75
12
55
38
20
4
38
1.71
10414--10515
2
51.5
2
77
9
93
53
4
40
0
1.29
12338--12367
13
2.3
13
100
0
60
6
30
0
63
1.20
20628--20667
2
20.0
2
90
10
64
47
0
2
50
1.14
48254--48414
59
2.7
60
84
1
198
34
17
18
29
1.93
48250--48417
31
5.6
30
63
12
85
33
17
17
30
1.94
48458--48628
60
2.9
61
75
8
154
33
14
11
40
1.82
49128--49160
2
16.5
2
100
0
66
51
0
48
0
1.00
66364--66415
3
17.3
3
77
15
54
38
0
1
59
1.08
66364--66415
13
4.3
12
76
16
54
38
0
1
59
1.08
66366--66409
16
2.7
17
82
10
56
38
0
0
61
0.96
85120--85145
11
2.4
11
100
0
52
92
7
0
0
0.39
89499--89538
17
2.4
16
84
12
53
35
22
22
20
1.96
96288--96357
32
2.2
32
97
0
131
40
17
7
35
1.77
97330--97355
7
3.7
7
100
0
52
15
15
42
26
1.87
98451--98481
15
2.1
15
100
0
62
61
12
6
19
1.53
98509--98543
14
2.5
14
90
0
61
68
0
8
22
1.16
105880--105904
3
8.3
3
100
0
50
32
32
36
0
1.58
108429--108605
87
2.0
87
88
0
264
42
9
33
13
1.77

Tables:   1

The End!