Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020884.1 Corchorus olitorius cultivar O-4 contig20917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94972

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3173
332
9.6
332
87
3
4394
36
15
14
32
1.89
1--3173
651
4.8
652
86
4
4190
36
15
14
32
1.89
1--3173
983
3.2
977
87
3
4401
36
15
14
32
1.89
26378--26473
18
5.3
18
76
10
79
5
18
27
48
1.69
26378--26474
36
2.7
36
73
7
97
5
18
26
49
1.68
26444--26520
30
2.6
30
95
0
136
6
19
27
46
1.74
26506--26591
30
2.9
30
83
0
109
6
22
25
45
1.77
26498--26543
21
2.2
21
84
0
56
6
26
19
47
1.73
26440--26591
81
1.9
81
81
2
189
6
21
25
46
1.75
26426--26571
51
2.9
50
74
7
136
6
21
25
45
1.76
27843--27878
5
7.2
5
100
0
72
19
0
19
61
1.35
30581--30638
3
20.7
3
77
13
61
32
1
1
63
1.14
30612--30646
5
6.8
5
90
3
52
40
0
0
60
0.97
33911--33985
7
9.4
8
69
25
52
64
4
32
0
1.12
33911--33978
15
4.3
15
71
22
50
63
4
32
0
1.14
33918--33985
12
5.6
12
81
8
75
64
4
30
0
1.13
38692--38755
21
3.1
21
74
17
80
34
9
20
35
1.85
52536--52590
7
7.9
7
100
0
110
14
58
27
0
1.37
53961--53988
6
4.7
6
100
0
56
32
50
0
17
1.47
83170--83197
6
4.7
6
100
0
56
0
28
35
35
1.58
83231--83260
6
5.0
6
100
0
60
16
0
33
50
1.46
83321--83369
18
2.6
19
87
6
73
16
20
10
53
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86532--86557
6
4.3
6
100
0
52
34
34
15
15
1.89

Tables:   1

The End!