Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020890.1 Corchorus olitorius cultivar O-4 contig20923, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69764

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
243--292
25
2.0
25
100
0
100
28
8
36
28
1.85
1357--1407
19
2.6
19
79
11
59
72
0
19
7
1.08
1544--1588
21
2.2
20
84
11
56
53
0
0
46
1.00
1805--3180
330
4.0
331
78
11
1349
31
16
17
34
1.92
5242--5284
3
14.0
3
90
4
68
34
2
0
62
1.08
7886--7932
6
7.8
6
85
0
58
29
46
2
21
1.63
22030--22076
24
2.0
24
91
0
76
25
12
23
38
1.90
22125--22154
14
2.1
14
100
0
60
36
20
6
36
1.79
23856--23911
27
2.1
27
96
0
103
37
3
19
39
1.69
28848--28880
5
6.8
5
89
3
50
39
18
0
42
1.50
32859--32896
20
1.9
20
88
0
58
44
7
23
23
1.79
34977--35001
7
3.6
7
100
0
50
28
0
44
28
1.55
39234--39268
13
2.6
14
86
9
54
62
0
37
0
0.95
39391--39424
5
6.8
5
93
0
59
79
0
20
0
0.73
40703--40746
23
2.0
21
83
12
54
50
9
2
38
1.47
41711--41738
2
14.0
2
100
0
56
50
0
0
50
1.00
41786--41840
26
2.3
23
84
9
65
32
5
7
54
1.51
42560--42821
87
3.0
87
100
0
524
27
26
17
28
1.97
57927--58206
109
2.6
110
82
3
350
38
12
10
38
1.77
59300--59331
7
4.6
7
96
0
55
84
12
3
0
0.74
69429--69458
14
2.1
14
100
0
60
26
20
23
30
1.98

Tables:   1

The End!