Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020894.1 Corchorus olitorius cultivar O-4 contig20927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22050

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1690--1977
107
2.8
106
86
5
399
40
9
8
42
1.67
13216--13265
22
2.3
22
93
3
84
30
14
18
38
1.89
14234--14344
56
2.0
56
96
0
204
38
12
4
44
1.63
14348--14377
2
15.0
2
92
0
51
46
0
3
50
1.18
14896--14933
20
1.9
20
88
0
58
42
2
5
50
1.39
18969--19042
29
2.5
31
82
10
91
51
22
2
22
1.61
20146--20224
37
2.1
38
90
4
124
36
18
8
35
1.83
21989--22040
26
2.0
25
81
3
59
57
5
5
30
1.46

Tables:   1

The End!