Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002090.1 Corchorus olitorius cultivar O-4 contig02090, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 787

Length: 1312
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.37


Found at i:159 original size:36 final size:36

Alignment explanation


    Indices: 112--181  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        102 TTCAATAACC

                         *      *    *          
        112 TTACATCTTTTGTGATTTTGGTTATTATATTTCTTA
          1 TTACATCTTTTGTAATTTTGATTATCATATTTCTTA

                  *                           
        148 TTACATTTTTTGTAATTTTGATTATCATATTTCT
          1 TTACATCTTTTGTAATTTTGATTATCATATTTCT

        182 CCAAAATCTC


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.21, C:0.09, G:0.09, T:0.61


Consensus pattern (36 bp):   
TTACATCTTTTGTAATTTTGATTATCATATTTCTTA

Found at i:868 original size:19 final size:19

Alignment explanation


    Indices: 844--880  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        834 CCGTTACTTC

                               
        844 ATTTTCTTCATTTGTGTTA
          1 ATTTTCTTCATTTGTGTTA

                         *    
        863 ATTTTCTTCATTTTTGTT
          1 ATTTTCTTCATTTGTGTT

        881 TTCTCCACCG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.14, C:0.11, G:0.08, T:0.68


Consensus pattern (19 bp):   
ATTTTCTTCATTTGTGTTA
Done.