Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020900.1 Corchorus olitorius cultivar O-4 contig20933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1952
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32


Found at i:959 original size:21 final size:22

Alignment explanation


    Indices: 935--975  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        925 TGAAAATAAT

                     *            
        935 TCTTCAAT-GGTCTTCAAATTG
          1 TCTTCAATAAGTCTTCAAATTG

                                
        956 TCTTCAATAAGTCTTCAAAT
          1 TCTTCAATAAGTCTTCAAAT

        976 AAGAACTTCG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21    8  0.44
  22   10  0.56

ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41


Consensus pattern (22 bp):   
TCTTCAATAAGTCTTCAAATTG

Done.