Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020903.1 Corchorus olitorius cultivar O-4 contig20936, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3642
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:2763 original size:21 final size:22

Alignment explanation


    Indices: 2728--2769  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       2718 CTAAGGTTTA

                                  
       2728 ATGGAATGCATGAATGAATGCC
          1 ATGGAATGCATGAATGAATGCC

                *                
       2750 ATGGCATG-ATGAATGAATGC
          1 ATGGAATGCATGAATGAATGC

       2770 ATGAGGCAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.36, C:0.12, G:0.29, T:0.24


Consensus pattern (22 bp):   
ATGGAATGCATGAATGAATGCC
Done.