genome.fa.s20904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020904.1 Corchorus olitorius cultivar O-4 contig20937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59666

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2346--2372	14	1.9	14	100	0	54	22	14	7	55	1.64
2626--2657	1	32.0	1	100	0	64	100	0	0	0	0.00
4708--4869	84	1.9	83	94	1	288	31	14	17	37	1.89
6399--6434	19	1.9	18	88	5	54	41	2	22	33	1.68
7074--7103	15	1.9	16	93	6	53	40	6	0	53	1.27
14381--14456	21	3.6	21	85	0	98	17	26	47	9	1.77
17321--17360	22	1.9	21	90	10	64	30	12	7	50	1.68
24849--24880	15	2.1	15	100	0	64	15	6	28	50	1.68
27755--27867	37	3.1	37	98	0	217	27	7	23	41	1.82
29168--29214	11	4.7	10	80	17	53	40	6	21	31	1.78
29179--29214	19	1.9	18	88	5	54	41	2	22	33	1.68
32247--32523	52	5.3	52	92	1	432	35	21	15	27	1.93
36826--36911	43	2.2	37	75	24	97	40	13	15	30	1.86
36842--36929	43	2.0	43	100	0	176	40	13	15	29	1.86
39082--39145	26	2.5	26	100	0	128	25	40	20	14	1.89
39682--39713	15	2.1	15	100	0	64	31	18	0	50	1.48
42579--42604	12	2.2	12	100	0	52	34	15	15	34	1.89
44346--44416	21	3.4	21	94	3	117	26	26	18	28	1.98
45121--45171	22	2.2	24	83	16	72	41	0	0	58	0.98
45121--45169	25	2.0	25	84	8	64	40	0	0	59	0.98
46343--46882	36	15.2	36	82	6	690	44	10	17	27	1.81
47275--47694	36	11.7	36	88	2	614	45	9	16	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47753--47935	55	3.3	55	87	2	233	47	6	21	24	1.74
55814--56084	98	2.6	105	78	11	328	42	8	8	40	1.66
58281--58327	17	2.9	16	81	12	51	48	0	0	51	1.00
58247--58356	2	58.5	2	68	18	58	48	1	4	45	1.33

Tables:   1

The End!