genome.fa.s20906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020906.1 Corchorus olitorius cultivar O-4 contig20939, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99874

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032--1111	40	2.0	40	95	0	142	50	6	23	20	1.71
4233--4334	29	3.5	29	90	0	141	45	21	17	15	1.86
5449--5561	21	5.4	21	93	2	167	24	26	18	30	1.98
5667--5862	58	3.4	58	97	0	365	41	16	16	25	1.88
5832--5893	31	2.0	31	93	0	106	38	22	12	25	1.90
5774--5951	89	2.0	89	96	0	329	41	17	15	25	1.89
5863--5978	58	2.0	57	93	1	196	43	15	12	27	1.83
6898--6925	1	28.0	1	100	0	56	0	0	0	100	0.00
6791--6910	38	3.2	38	86	3	163	9	19	11	60	1.58
15837--15884	12	4.0	12	100	0	96	25	33	16	25	1.96
15841--15893	24	2.2	24	89	0	79	26	39	11	22	1.88
25732--25756	13	1.9	13	100	0	50	40	16	12	32	1.84
29981--30084	29	3.6	29	93	0	163	47	24	14	14	1.81
37228--38944	943	1.8	936	91	1	2674	35	18	16	29	1.93
40809--40857	17	3.0	17	75	16	50	14	36	10	38	1.80
42448--42496	21	2.3	22	82	6	57	20	32	22	24	1.98
42434--42578	76	1.9	76	81	2	175	16	31	26	24	1.96
48750--48778	12	2.3	13	94	5	51	75	0	6	17	1.01
49134--49274	76	1.9	76	81	3	176	15	32	26	25	1.95
49446--49487	15	2.7	15	92	3	66	64	14	9	11	1.50
59224--59267	22	2.0	22	90	0	70	11	61	20	6	1.52
63789--63850	27	2.3	27	91	0	97	19	17	29	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63802--63859	27	2.1	27	87	0	80	17	18	29	34	1.94
66497--66630	41	3.3	41	90	0	205	26	14	13	44	1.83
67477--67523	22	2.2	22	84	3	60	48	6	14	29	1.69
67474--67523	21	2.3	21	82	3	64	48	6	18	28	1.71
70198--70233	15	2.5	15	90	4	56	38	8	13	38	1.75
73018--73216	67	3.0	66	85	3	263	38	12	22	26	1.89
73235--73570	64	5.2	64	84	3	399	35	16	22	25	1.95
73775--74304	50	10.6	50	91	3	784	37	11	25	25	1.90
73861--73944	27	3.3	27	61	19	70	35	11	27	25	1.91
73938--74017	23	3.3	23	68	19	72	43	12	25	18	1.85
74601--74682	26	3.1	26	76	15	87	20	14	25	39	1.91
88098--88369	135	2.0	135	99	0	535	31	10	12	44	1.76
88744--88798	25	2.2	27	75	18	64	25	12	25	36	1.91
88756--88806	25	2.0	25	100	0	102	23	11	27	37	1.90
89244--89274	15	2.1	15	93	0	53	9	0	9	80	0.90
94900--94926	3	9.0	3	100	0	54	33	0	0	66	0.92
94896--94973	9	8.4	9	79	11	54	32	1	1	65	1.09
96902--97073	35	4.8	33	76	13	146	35	18	16	29	1.93
96909--97078	75	2.4	70	85	6	207	34	17	17	30	1.93
98912--98937	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!