Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020907.1 Corchorus olitorius cultivar O-4 contig20940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35465

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
758--871
36
3.2
36
62
22
85
45
23
14
16
1.84
758--980
72
3.1
72
92
3
383
44
24
14
17
1.85
992--1072
37
2.2
38
93
6
141
40
12
28
18
1.87
1441--1492
27
1.9
27
84
7
70
32
19
26
21
1.97
1509--1757
33
7.5
33
74
12
224
35
15
25
22
1.94
1439--1772
66
5.1
66
86
3
439
37
15
24
22
1.93
1777--2710
39
23.9
39
85
0
1125
32
20
17
30
1.95
1777--2710
78
12.0
78
87
0
1269
32
20
17
30
1.95
2818--3059
8
32.7
7
70
22
54
45
1
21
31
1.61
2705--2838
56
2.4
56
86
3
180
42
10
20
26
1.84
2825--3053
14
16.1
14
68
23
99
46
1
20
31
1.61
2825--3000
22
7.9
22
76
7
135
46
2
21
30
1.64
2852--3059
81
2.5
81
98
1
398
46
1
20
30
1.62
3039--3231
56
3.4
57
94
3
329
43
9
22
25
1.83
3198--3332
22
6.1
22
78
2
128
45
2
19
32
1.65
3197--3329
44
3.0
44
89
1
203
44
3
18
33
1.65
4542--4581
21
2.0
21
85
5
55
35
12
2
50
1.54
4542--4595
21
2.6
20
80
8
54
33
14
5
46
1.68
6068--6119
14
3.7
14
80
14
63
36
11
7
44
1.70
6064--6119
28
2.1
26
87
12
78
37
14
7
41
1.73
6498--6649
48
3.1
48
88
2
241
29
13
8
48
1.71
6503--6649
50
3.0
50
88
3
244
29
12
8
48
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8898--9019
35
3.4
34
80
10
129
36
18
15
29
1.92
8898--9060
75
2.3
69
85
7
209
36
17
17
29
1.92
9746--9797
22
2.4
22
84
9
63
51
3
0
44
1.19
15581--15656
27
2.8
27
95
0
134
14
21
27
36
1.92
16932--16965
14
2.4
14
90
0
50
14
47
0
38
1.45
16923--17044
56
2.2
56
96
0
226
36
33
0
29
1.58
16988--17021
14
2.4
14
95
0
59
14
44
0
41
1.45
16996--17218
75
3.0
75
92
4
357
30
30
3
34
1.75
22126--22167
16
2.6
16
82
10
50
52
7
9
30
1.61
25020--25604
67
8.8
67
92
0
906
37
12
22
26
1.90
25630--25707
40
2.0
39
92
2
129
33
12
24
29
1.92
25945--26326
51
7.5
51
91
1
590
37
10
25
25
1.89
25945--26373
153
2.8
153
86
4
582
37
11
25
25
1.89
26617--26692
27
2.8
27
93
0
125
14
21
26
38
1.91
27965--27995
14
2.2
14
94
0
53
16
45
0
38
1.47
30283--30496
76
2.9
76
93
4
361
30
31
3
34
1.75
32944--32973
15
2.0
15
93
0
51
13
10
43
33
1.77

Tables:   1

The End!