Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020909.1 Corchorus olitorius cultivar O-4 contig20942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45560

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4345--4422
31
2.5
31
87
4
113
29
24
17
28
1.98
4540--4587
2
24.0
2
91
0
78
50
4
0
45
1.21
4540--4587
14
3.4
14
97
0
87
50
4
0
45
1.21
13885--13934
3
16.7
3
100
0
100
34
0
0
66
0.92
14618--14666
16
3.2
16
67
21
50
59
6
2
32
1.34
17721--17814
49
1.9
49
82
8
120
19
7
27
45
1.76
20076--20184
55
2.0
55
90
0
173
49
28
10
11
1.72
32169--32385
92
2.4
91
78
9
217
33
8
14
43
1.76
35686--35779
45
2.2
44
86
7
140
38
20
5
36
1.75
36528--36578
7
7.9
7
77
14
56
54
0
1
43
1.11
37522--37783
107
2.5
104
90
3
393
41
9
8
40
1.68
39389--39420
16
2.0
16
93
0
55
43
34
18
3
1.66
39916--40270
177
2.0
180
87
5
522
50
2
9
36
1.49
40967--41004
11
3.5
11
85
10
51
57
2
0
39
1.12
44270--44344
27
2.7
28
85
4
89
22
13
25
38
1.90

Tables:   1

The End!