Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020914.1 Corchorus olitorius cultivar O-4 contig20947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7044
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27


Found at i:5810 original size:24 final size:24

Alignment explanation


    Indices: 5781--5832  Score: 104
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       5771 ATCTGCTTTC

                                    
       5781 AAAGTAAATTTGCAAAGTTCATCA
          1 AAAGTAAATTTGCAAAGTTCATCA

                                    
       5805 AAAGTAAATTTGCAAAGTTCATCA
          1 AAAGTAAATTTGCAAAGTTCATCA

                
       5829 AAAG
          1 AAAG

       5833 CTTCTTTCAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27


Consensus pattern (24 bp):   
AAAGTAAATTTGCAAAGTTCATCA
Done.